FC873471

Overview
NameFC873471
Unique NameFC873471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_ANAPL (Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrhynchos GN=ADH1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.459e-21
Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 2
Query:  236 GSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            GS  AVFGLG V             SR+I +DI+  KF +AK  G T+ +NPKDH +PI +V++ +T  GVDYSFE IG +  M AAL  CH  +G SVIVGV
Sbjct:    3 GSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINSDKFAKAKELGATDCINPKDHKEPIHKVLIGMTGYGVDYSFEVIGRIETMVAALASCHYNYGVSVIVGV 105          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHB_MYCTU (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis GN=adhB PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.113e-16
Identity = 48/120 (40.00%), Postives = 57/120 (47.50%), Query Frame = 2
Query:   17 AGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVT 376
            AG  + D   R    GQ +Y      TFS Y VVH  SV KIDP  P +  CL+GCGV TG G+   TA V PG  VA+ GLG V               V  ++    K D+A  FG T
Sbjct:  114 AGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVGLGGVGMAALQGAVSAGARYVFAVEPVEWKRDQALKFGAT 233          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHB_MYCBO (Alcohol dehydrogenase B OS=Mycobacterium bovis GN=adhB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.113e-16
Identity = 48/120 (40.00%), Postives = 57/120 (47.50%), Query Frame = 2
Query:   17 AGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVT 376
            AG  + D   R    GQ +Y      TFS Y VVH  SV KIDP  P +  CL+GCGV TG G+   TA V PG  VA+ GLG V               V  ++    K D+A  FG T
Sbjct:  114 AGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVGLGGVGMAALQGAVSAGARYVFAVEPVEWKRDQALKFGAT 233          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.013e-14
Identity = 55/163 (33.74%), Postives = 73/163 (44.79%), Query Frame = 2
Query:   59 NGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            +G  +   +G   F+  T+VH     K+DP A      LLGCGV  GLGA  NT  V  G  VAV G G V             +++I +D D KK + A   G T  VN  + D  + + V  LT G G D   + +G     + A        GT V+VGV
Sbjct:  120 DGTELTPALGIGAFADKTLVHAGQCTKVDPAADPAVAGLLGCGVMAGLGAAVNTGAVSRGDSVAVIGCGAVGDAVIAGARLAGANKIIAVDRDAKKLEWATELGATHTVNATETD--VVEAVQALTGGFGADVVIDAVGRPETWKQAFYARDLA-GTVVLVGV 279          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: XYLB_PSEPU (Aryl-alcohol dehydrogenase OS=Pseudomonas putida GN=xylB PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.566e-14
Identity = 42/140 (30.00%), Postives = 68/140 (48.57%), Query Frame = 2
Query:   80 FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAAL 499
            F G S+F+ Y + ++ +  K+    PL+ +  LGCG+ TG G+V N      GS +A+FG G V             + +I +D+   + + A   G T  +NP  +D PI+ +     D GV Y  E  G  +V+  A+
Sbjct:  135 FFGQSSFATYALSYERNTVKVTKDVPLELLGPLGCGIQTGAGSVLNALNPPAGSAIAIFGAGAVGLSAVMAAVVAGCTTIIAVDVKENRLELASELGATHIINPAAND-PIEAIKEIFAD-GVPYVLETSGLPAVLTQAI 272          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: TERPD_PSESP (Probable alcohol dehydrogenase OS=Pseudomonas sp. GN=terPD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.260e-13
Identity = 53/159 (33.33%), Postives = 78/159 (49.06%), Query Frame = 2
Query:   80 FMGTSTFSQYTVVHDVSVAKIDP---QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            F G S+FS   +  + ++ KID     AP++ +  LGCGV TG GAV  +  V  G    V G G V             SR+I  +    K ++A   G TE ++P + +  + + V  +T+G G DY+ EC G VSVM  A++      G   +VGV
Sbjct:  112 FFGQSSFSSMAMAREHNLVKIDALVDDAPIELLGPLGCGVQTGAGAVMISLDVRAGRSFLVLGGGAVGLSAVMAAKLRGCSRIIVSEPSAAKREQALALGATEVIDPLNEN--LVERVQQITEGQGCDYALECTGLVSVMEQAIDSMAMR-GQLAVVGV 267          
The following BLAST results are available for this feature:
BLAST of FC873471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ADH1_ANAPL1.459e-2149.51Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrh... [more]
ADHB_MYCTU4.113e-1640.00Alcohol dehydrogenase B OS=Mycobacterium tuberculo... [more]
ADHB_MYCBO4.113e-1640.00Alcohol dehydrogenase B OS=Mycobacterium bovis GN=... [more]
FADH_AMYME1.013e-1433.74NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]
XYLB_PSEPU6.566e-1430.00Aryl-alcohol dehydrogenase OS=Pseudomonas putida G... [more]
TERPD_PSESP7.260e-1333.33Probable alcohol dehydrogenase OS=Pseudomonas sp. ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CE02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873471 ID=FC873471; Name=FC873471; organism=Citrus clementina; type=EST; length=552bp
TAGGGGTGCCACTGGTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTT
TCTCGATAAATGGACAGCCTATCTATCACTTCATGGGAACCTCAACATTT
AGCCAGTACACAGTTGTGCATGATGTTAGTGTTGCAAAGATTGACCCACA
AGCTCCTTTGGACAAAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTC
TTGGAGCAGTTTGGAACACTGCAAAAGTAGAGCCGGGTTCTATAGTTGCT
GTTTTTGGCCTTGGGACTGTTGGCCTTGCTGTGGCAGAGGGTGCAAAGGC
AGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCGAAAAAGTTTG
ATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGACCAT
GACAAACCCATTCAGCAGGTCGTTGTCGATCTCACGGATGGTGGTGTTGA
CTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTTTGG
AATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCTGCA
TC
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