FC873471

Overview
NameFC873471
Unique NameFC873471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_ARATH (Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 2.303e-59
Identity = 108/178 (60.67%), Postives = 131/178 (73.60%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  G M++D +SRFSING+PIYHF+GTSTFS+YTVVH   VAKI+P APLDKVC++ CG+ TGLGA  N AK + G  VA+FGLG V             SR+IG+D + K+FD+AK FGVTE VNPKDHDKPIQQV+ ++TDGGVD S EC G+V  M  A EC H GWG +V+VGV
Sbjct:  120 TERGGMIHDGESRFSINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLSTGLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEFGVTECVNPKDHDKPIQQVIAEMTDGGVDRSVECTGSVQAMIQAFECVHDGWGVAVLVGV 297          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_PETHY (Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.008e-59
Identity = 108/179 (60.34%), Postives = 133/179 (74.30%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDH-DKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM++D ++RFS +G+PIYHF+GTSTFS+YTV H   V KIDPQAPLDKVC+L CG+ TGLGA  N AK   GS VA+FGLG V             SR+IG+D++P +F+ AK FGVTEFVNPKDH DKP+QQV+ ++TDGGVD S EC GNV+ M +A EC H GWG +V+VGV
Sbjct:  122 TDRGVMIHDGQTRFSKDGKPIYHFVGTSTFSEYTVCHSGCVTKIDPQAPLDKVCVLSCGISTGLGATLNVAKPTKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFNDAKKFGVTEFVNPKDHGDKPVQQVIAEMTDGGVDRSVECTGNVNAMISAFECVHDGWGVAVLVGV 300          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_PEA (Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.008e-59
Identity = 105/178 (58.99%), Postives = 132/178 (74.16%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM+ND KSRFSI GQP++HF+GTSTFS+YTVVH   VAKI+P APLDKVC+L CG+ TGLGA  N AK +PGS VA+FGLG V             SR+IG+D+   +F+ AK FGV EFVNPK+HDKP+QQV+ ++T+GGVD + EC G++  M +A EC H GWG +V+VGV
Sbjct:  121 TDRGVMLNDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKEHDKPVQQVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGV 298          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.929e-59
Identity = 111/182 (60.99%), Postives = 135/182 (74.18%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            R   G GVM  D  SRFS NGQ +YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +P KF+ AK  G T+ +NPKDHD+PIQQV+V++T  GVD+SFECIGNV VMR+ALEC H+GWG SVI+GVA
Sbjct:  110 RATQGKGVMP-DGTSRFSYNGQSLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGGIGLAVVQGARQAKAGRIIAIDTNPAKFELAKQMGATDCINPKDHDQPIQQVIVEMTGWGVDHSFECIGNVEVMRSALECAHRGWGQSVIIGVA 290          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH3_SOLTU (Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.929e-59
Identity = 106/178 (59.55%), Postives = 133/178 (74.72%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM+ND +SRFSING+PIYHF+GTSTFS+YTVVH   VAKI+P APLDKVC+L CG+ TGLGA  N AK   GS VA+FGLG V             SR+IG+D++  +F++AK FGVTEFVNPKD+ KP+Q+V+ ++TDGGVD S EC G++  M +A EC H GWG +V+VGV
Sbjct:  121 TDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGV 298          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH2_SOLTU (Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.929e-59
Identity = 106/178 (59.55%), Postives = 133/178 (74.72%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM+ND +SRFSING+PIYHF+GTSTFS+YTVVH   VAKI+P APLDKVC+L CG+ TGLGA  N AK   GS VA+FGLG V             SR+IG+D++  +F++AK FGVTEFVNPKD+ KP+Q+V+ ++TDGGVD S EC G++  M +A EC H GWG +V+VGV
Sbjct:  121 TDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGV 298          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_SOLTU (Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.929e-59
Identity = 106/178 (59.55%), Postives = 133/178 (74.72%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM+ND +SRFSING+PIYHF+GTSTFS+YTVVH   VAKI+P APLDKVC+L CG+ TGLGA  N AK   GS VA+FGLG V             SR+IG+D++  +F++AK FGVTEFVNPKD+ KP+Q+V+ ++TDGGVD S EC G++  M +A EC H GWG +V+VGV
Sbjct:  121 TDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGV 298          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSJ (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=ADH1 PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 3.929e-59
Identity = 107/178 (60.11%), Postives = 131/178 (73.60%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM+ D KSRFSING+PIYHF+GTSTFS+YTV+H   VAKI+P APLDKVC+L CG+ TGLGA  N AK   GS VA+FGLG V             SR+IGID++  +F+ A+ FG TEFVNPKDHDKP+QQV+ ++T+GGVD S EC GN++ M  A EC H GWG +V+VGV
Sbjct:  120 TDRGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPAAPLDKVCVLSCGISTGLGATINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGIDLNANRFEEARKFGCTEFVNPKDHDKPVQQVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGV 297          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSI (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. indica GN=ADH1 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.929e-59
Identity = 107/178 (60.11%), Postives = 131/178 (73.60%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM+ D KSRFSING+PIYHF+GTSTFS+YTV+H   VAKI+P APLDKVC+L CG+ TGLGA  N AK   GS VA+FGLG V             SR+IGID++  +F+ A+ FG TEFVNPKDHDKP+QQV+ ++T+GGVD S EC GN++ M  A EC H GWG +V+VGV
Sbjct:  120 TDRGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPAAPLDKVCVLSCGISTGLGATINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGIDLNANRFEEARKFGCTEFVNPKDHDKPVQQVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGV 297          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_MAIZE (Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 6.701e-59
Identity = 107/178 (60.11%), Postives = 132/178 (74.16%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM+ D KSRFSING+PIYHF+GTSTFS+YTV+H   VAKI+PQAPLDKVC+L CG  TGLGA  N AK   GS VAVFGLG V             SR+IG+D++P +F+ A+ FG TEFVNPKDH+KP+Q+V+ ++T+GGVD S EC GN++ M  A EC H GWG +V+VGV
Sbjct:  120 TDRGVMIADGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPQAPLDKVCVLSCGYSTGLGASINVAKPPKGSTVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEARKFGCTEFVNPKDHNKPVQEVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGV 297          
The following BLAST results are available for this feature:
BLAST of FC873471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ADH1_ARATH2.303e-5960.67Alcohol dehydrogenase class-P OS=Arabidopsis thali... [more]
ADH1_PETHY3.008e-5960.34Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1... [more]
ADH1_PEA3.008e-5958.99Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1[more]
FRMA_SYNY33.929e-5960.99S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]
ADH3_SOLTU3.929e-5959.55Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=AD... [more]
ADH2_SOLTU3.929e-5959.55Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=AD... [more]
ADH1_SOLTU3.929e-5959.55Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=AD... [more]
ADH1_ORYSJ3.929e-5960.11Alcohol dehydrogenase 1 OS=Oryza sativa subsp. jap... [more]
ADH1_ORYSI3.929e-5960.11Alcohol dehydrogenase 1 OS=Oryza sativa subsp. ind... [more]
ADH1_MAIZE6.701e-5960.11Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CE02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873471 ID=FC873471; Name=FC873471; organism=Citrus clementina; type=EST; length=552bp
TAGGGGTGCCACTGGTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTT
TCTCGATAAATGGACAGCCTATCTATCACTTCATGGGAACCTCAACATTT
AGCCAGTACACAGTTGTGCATGATGTTAGTGTTGCAAAGATTGACCCACA
AGCTCCTTTGGACAAAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTC
TTGGAGCAGTTTGGAACACTGCAAAAGTAGAGCCGGGTTCTATAGTTGCT
GTTTTTGGCCTTGGGACTGTTGGCCTTGCTGTGGCAGAGGGTGCAAAGGC
AGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCGAAAAAGTTTG
ATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGACCAT
GACAAACCCATTCAGCAGGTCGTTGTCGATCTCACGGATGGTGGTGTTGA
CTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTTTGG
AATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCTGCA
TC
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