FC873471

Overview
NameFC873471
Unique NameFC873471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH_FRAAN (Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH PE=3 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.143e-58
Identity = 105/178 (58.99%), Postives = 129/178 (72.47%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM+ND KSRFSI G+PIYHF+GTSTFS YTV H   +AKI+PQ+PLDKVC+L CG+ TGLGA  N  K + GS VAVFGLG V             SR+IG+D++  +F+ AK FG+TEFVNPKDH KP+Q+V+ +LT+GGVD S EC GN+  M  A EC H GWG +V+VGV
Sbjct:  121 TDRGVMLNDGKSRFSIKGKPIYHFVGTSTFSVYTVTHVGCLAKINPQSPLDKVCILSCGISTGLGATLNVRKPKKGSTVAVFGLGAVGLAAAEGARMAGASRIIGVDLNSNRFEEAKKFGITEFVNPKDHKKPVQEVIAELTNGGVDRSIECTGNIQAMIPAFECVHDGWGVAVLVGV 298          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_HORVU (Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 5.673e-58
Identity = 106/178 (59.55%), Postives = 130/178 (73.03%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM+ D KSRFSI G+PIYHF+GTSTFS+YTV+H   VAKI+P+APLDKVC+L CG+ TGLGA  N AK   GS VA+FGLG V             SR+IG+D++  +F+ A+ FG TEFVNPKDH KP+QQV+ D+T+GGVD S EC GNV+ M  A EC H GWG +V+VGV
Sbjct:  120 TDRGVMIGDGKSRFSIGGKPIYHFVGTSTFSEYTVMHVGCVAKINPEAPLDKVCVLSCGISTGLGASINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNAVRFEEARKFGCTEFVNPKDHTKPVQQVLADMTNGGVDRSVECTGNVNAMIQAFECVHDGWGVAVLVGV 297          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.156e-57
Identity = 107/182 (58.79%), Postives = 135/182 (74.18%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            R   G GVM  D  SRF +NGQP+YH+MG STFS+YTVV +VS+AKI+PQA  ++VCLLGCGV TG+GAV NTAKV+ G  VAVFGLG +              R+  ID +P KF+ AK FG T+ +NP D+DKP+QQV+V++T  GVD++FECIGNV+VMR+ALE  H+GWG SVI+GVA
Sbjct:  110 RETQGKGVMP-DATSRFFVNGQPLYHYMGCSTFSEYTVVAEVSLAKINPQANAEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGGIGLAVVQGARQAKAGRIFAIDTNPSKFELAKQFGATDCINPNDYDKPVQQVLVEMTKWGVDHTFECIGNVNVMRSALESAHRGWGQSVIIGVA 290          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.815e-57
Identity = 106/182 (58.24%), Postives = 135/182 (74.18%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            R   G G +M D  +RFS NGQP+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKFD A+ FG T+ +NP D+DKPI+ V++D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  110 RETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLI (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain K12) GN=frmA PE=1 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 2.815e-57
Identity = 106/182 (58.24%), Postives = 135/182 (74.18%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            R   G G +M D  +RFS NGQP+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKFD A+ FG T+ +NP D+DKPI+ V++D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  110 RETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLC (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frmA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.815e-57
Identity = 106/182 (58.24%), Postives = 135/182 (74.18%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            R   G G +M D  +RFS NGQP+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKFD A+ FG T+ +NP D+DKPI+ V++D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  110 RETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.815e-57
Identity = 106/182 (58.24%), Postives = 135/182 (74.18%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            R   G G +M D  +RFS NGQP+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKFD A+ FG T+ +NP D+DKPI+ V++D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  110 RETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.815e-57
Identity = 106/182 (58.24%), Postives = 135/182 (74.18%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            R   G G +M D  +RFS NGQP+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKFD A+ FG T+ +NP D+DKPI+ V++D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  110 RETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.815e-57
Identity = 106/182 (58.24%), Postives = 135/182 (74.18%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            R   G G +M D  +RFS NGQP+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAKV+PG  VAVFGLG +              R+I ID +PKKFD A+ FG T+ +NP D+DKPI+ V++D+   G+D++FECIGNV+VMRAALE  H+GWG SVI+GVA
Sbjct:  110 RETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVA 290          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH_MALDO (Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.677e-57
Identity = 105/178 (58.99%), Postives = 129/178 (72.47%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM++D KSRFSI G+PIYHF+GTSTFS+YTVVH   +AKI+P APLDKVCLL CG+ TGLGA  N AK + GS VAVFGLG V             SR+IG+D+   +F+ AK FGVTEFVNPK H+KP+Q+V+ +LT+ GVD S EC G+   M +A EC H GWG +V+VGV
Sbjct:  121 TDRGVMLSDGKSRFSIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCLLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDLHSDRFEEAKKFGVTEFVNPKAHEKPVQEVIAELTNRGVDRSIECTGSTEAMISAFECVHDGWGVAVLVGV 298          
The following BLAST results are available for this feature:
BLAST of FC873471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ADH_FRAAN1.143e-5858.99Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH ... [more]
ADH1_HORVU5.673e-5859.55Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1... [more]
FRMA_PASPI2.156e-5758.79S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
FRMA_SHISS2.815e-5758.24S-(hydroxymethyl)glutathione dehydrogenase OS=Shig... [more]
FRMA_ECOLI2.815e-5758.24S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOLC2.815e-5758.24S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOHS2.815e-5758.24S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO572.815e-5758.24S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO242.815e-5758.24S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH_MALDO3.677e-5758.99Alcohol dehydrogenase OS=Malus domestica GN=ADH PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CE02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873471 ID=FC873471; Name=FC873471; organism=Citrus clementina; type=EST; length=552bp
TAGGGGTGCCACTGGTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTT
TCTCGATAAATGGACAGCCTATCTATCACTTCATGGGAACCTCAACATTT
AGCCAGTACACAGTTGTGCATGATGTTAGTGTTGCAAAGATTGACCCACA
AGCTCCTTTGGACAAAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTC
TTGGAGCAGTTTGGAACACTGCAAAAGTAGAGCCGGGTTCTATAGTTGCT
GTTTTTGGCCTTGGGACTGTTGGCCTTGCTGTGGCAGAGGGTGCAAAGGC
AGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCGAAAAAGTTTG
ATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGACCAT
GACAAACCCATTCAGCAGGTCGTTGTCGATCTCACGGATGGTGGTGTTGA
CTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTTTGG
AATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCTGCA
TC
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