FC873471

Overview
NameFC873471
Unique NameFC873471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH2_HORVU (Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 5.870e-55
Identity = 96/170 (56.47%), Postives = 126/170 (74.12%), Query Frame = 2
Query:   20 GVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTS 529
            GVM++D +SRF+I+G+PI+HF+GTSTFS+YTV+H   VAKIDP+APLDKVCLL CG+ TGLGA  N  K + G  VA+FGLG V             SR+IG+D++P K ++AK FG T+FVNPKDH KP+Q+V+V++TDGGV+ + EC GN   M +A EC H GWG +
Sbjct:  123 GVMIDDGQSRFTIDGKPIFHFLGTSTFSEYTVIHVGCVAKIDPEAPLDKVCLLSCGISTGLGATLNVTKPKKGMTVAIFGLGAVGLAAMEGARMSGASRIIGVDLNPAKHEQAKKFGCTDFVNPKDHTKPVQEVIVEMTDGGVNRAVECTGNADAMISAFECVHDGWGVA 292          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 7.667e-55
Identity = 101/174 (58.05%), Postives = 126/174 (72.41%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            MM D  SR +  G+ +YHFMG STFS+Y VV D+S+ ++ P+AP D+VCLLGCGV TG GA  NTAKVEPGS  A+FGLG V             SR+I ID +P KF++A+ FG T+ V P   DKPI QV+ ++TDGG+DY+FEC+GNV +MRAALE CHKGWG SVI+GVA
Sbjct:  124 MMPDGTSRLTCRGKSLYHFMGASTFSEYAVVADISLCRVAPEAPPDRVCLLGCGVSTGYGAPLNTAKVEPGSTCAIFGLGAVGLAAIMGCRVAGASRIIAIDRNPDKFEKARIFGATDCVVPDASDKPISQVLGEMTDGGLDYTFECVGNVGIMRAALESCHKGWGVSVILGVA 297          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHX_DROME (Alcohol dehydrogenase class-3 OS=Drosophila melanogaster GN=Fdh PE=1 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 7.667e-55
Identity = 108/180 (60.00%), Postives = 132/180 (73.33%), Query Frame = 2
Query:   14 GAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKD-HDK-PIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            GAGVM  +  SR S  GQ ++HFMGTSTF++YTVV D+S+ KI+ +APL+KVCLLGCG+ TG GA  NTAKVE GS  AV+GLG V              ++ GIDI+P KF+ AK FG T+FVNPKD  DK  IQ  ++DLTDGG DY+FECIGNV+ MR+ALE  HKGWGTSV++GVA
Sbjct:  122 GAGVMP-EGTSRLSCKGQQLFHFMGTSTFAEYTVVADISLTKINEKAPLEKVCLLGCGISTGYGAALNTAKVEAGSTCAVWGLGAVGLAVGLGCKKAGAGKIYGIDINPDKFELAKKFGFTDFVNPKDVADKGSIQNYLIDLTDGGFDYTFECIGNVNTMRSALEATHKGWGTSVVIGVA 300          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHX_DICDI (Alcohol dehydrogenase class-3 OS=Dictyostelium discoideum GN=adh5 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.805e-54
Identity = 108/176 (61.36%), Postives = 124/176 (70.45%), Query Frame = 2
Query:   29 MNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNP-KD--HDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            M D  +RF   G+ I+HFMGTSTFSQYTV+ ++S   +   APLDKVCLLGCG+ TG GA   TAKVE GS VA+FGLG V              R+IGID +  KF   K+FG TEF+NP KD    K IQQ +VD+TDGGVDYSFECIGNV+VMRAALECCHKGWG S IVGVA
Sbjct:  125 MPDGTTRFKCKGKEIFHFMGTSTFSQYTVLPEISCCVVREDAPLDKVCLLGCGITTGFGAAKITAKVEEGSTVAIFGLGAVGLSVAQGAVDCGAKRIIGIDNNETKFGPGKDFGCTEFINPSKDLPEGKTIQQHLVDITDGGVDYSFECIGNVNVMRAALECCHKGWGVSTIVGVA 300          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 6.491e-54
Identity = 101/182 (55.49%), Postives = 132/182 (72.53%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            R   G G +M D  +RFS  GQPIYH+MG STFS+Y+VV +VS+AKI+P+A  ++VCLLGCGV TG+GAV NTAKV+ G  VAVFGLG +              R+I ID +P KF+ AK FG T+ +NP D+DKPI+ V++D+   G+D++FECIGNV+VMR ALE  H+GWG S+I+GVA
Sbjct:  119 RDTQGKG-LMPDCTTRFSYQGQPIYHYMGCSTFSEYSVVAEVSLAKINPEANHEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPAKFELAKQFGATDCLNPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRQALESAHRGWGQSIIIGVA 299          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 4.651e-52
Identity = 99/174 (56.90%), Postives = 124/174 (71.26%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            +M+D  SRF+  G+PIYHFMGTSTFS+YTVV + S+AKID  APLDKVCL+GCG  TG GA  NTA+VEPGS  AVFGLG V             S++ GIDI+  KF  AK  G T+ +NP+D  KP+Q+++ ++T+GGVD++ ECIGN  VM+AA E    GWGT VIVGVA
Sbjct:  127 VMSDGTSRFTCKGKPIYHFMGTSTFSEYTVVSESSLAKIDAAAPLDKVCLIGCGFSTGYGAAINTAQVEPGSTCAVFGLGGVGLSAVMGCKAAGASKIFGIDINKDKFPLAKKLGATDCLNPQDIRKPVQEIIAEMTNGGVDFAIECIGNPDVMKAAFESTTVGWGTCVIVGVA 300          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 1.768e-51
Identity = 98/183 (53.55%), Postives = 125/183 (68.31%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            R   G G +M D  SRFS NG  + HFMG STFS+YTVV D+SV  I+  APLD VCLLGCG+ TG GA   TA ++ G  VAVFGLG+V              R+ GID++P+K + A +FG T+F+NP D   PIQ V++  TDGG+D++F+C GNV VMR+ALE CHKGWG S+++GVAA
Sbjct:  120 RTTQGKG-LMPDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAATITADIKEGDSVAVFGLGSVGLAVIQGAVKKRAGRIFGIDVNPEKKNWAMSFGATDFINPNDLQSPIQDVLIHETDGGLDWTFDCTGNVHVMRSALEACHKGWGQSIVIGVAA 301          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 199.134 bits (505), Expect = 1.146e-50
Identity = 94/175 (53.71%), Postives = 122/175 (69.71%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            +M D+ SRF+  G+P+YHF GTSTFSQYTVV D+++AKID  A L++VCLLGCG  TG GA  N AKV PGS  AVFGLG V             SR+IGIDI+ +KF +AK  G T+ +NP+D  KPIQ+V+++LT GGVD++ +C G    M+AAL+C   GWG+   +GVAA
Sbjct:  128 LMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLNPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAA 302          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.552e-50
Identity = 98/173 (56.65%), Postives = 120/173 (69.36%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            +M D  SRF+  G+ I+HF+GTSTF++YTVVH+ +VA+ID  APL+KVCL+GCG  TG GA    AKVEPGS  AVFGLG V             SR+IGIDI+  KF +AK  G TE +NP D  KPIQ+V+ ++T GGVDYSFE IG +  M AAL CC   +GTSVIVGV
Sbjct:  122 LMADGTSRFTCKGKDIHHFIGTSTFTEYTVVHETAVARIDAAAPLEKVCLIGCGFSTGYGAAVKDAKVEPGSTCAVFGLGGVGLSTIMGCKAAGASRIIGIDINKDKFAKAKELGATECINPLDCKKPIQEVLSEMTGGGVDYSFEVIGRIDTMTAALACCQDNYGTSVIVGV 294          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 7.426e-50
Identity = 97/186 (52.15%), Postives = 121/186 (65.05%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKD---HDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            R   G GVM +      +  G+ IYHFMG STFS+YTVV DVSV  IDP+APLD  CLLGCGV TG GA   TA V+ G  VAVFG GTV             S++I IDI+ KK      FG T+FVNPK+    D+ I + ++++TDGG+D++F+C GN  +MR ALE CHKGWG S+I+GVAA
Sbjct:  119 RATQGKGVMPDGTTRFHNAKGEDIYHFMGCSTFSEYTVVADVSVVAIDPKAPLDAACLLGCGVTTGFGAALKTANVQKGDTVAVFGCGTVGLSVIQGAKLRGASKIIAIDINNKKKQYCSQFGATDFVNPKEDLAKDQTIVEKLIEMTDGGLDFTFDCTGNTKIMRDALEACHKGWGQSIIIGVAA 304          
The following BLAST results are available for this feature:
BLAST of FC873471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ADH2_HORVU5.870e-5556.47Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2... [more]
ADHX_MYXGL7.667e-5558.05Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
ADHX_DROME7.667e-5560.00Alcohol dehydrogenase class-3 OS=Drosophila melano... [more]
ADHX_DICDI3.805e-5461.36Alcohol dehydrogenase class-3 OS=Dictyostelium dis... [more]
FRMA_HAEIN6.491e-5455.49S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
ADH4_STRCA4.651e-5256.90Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]
FADH2_SCHPO1.768e-5153.55Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADH4_HUMAN1.146e-5053.71Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH1_ALLMI2.552e-5056.65Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
FADH_YEAST7.426e-5052.15S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CE02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873471 ID=FC873471; Name=FC873471; organism=Citrus clementina; type=EST; length=552bp
TAGGGGTGCCACTGGTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTT
TCTCGATAAATGGACAGCCTATCTATCACTTCATGGGAACCTCAACATTT
AGCCAGTACACAGTTGTGCATGATGTTAGTGTTGCAAAGATTGACCCACA
AGCTCCTTTGGACAAAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTC
TTGGAGCAGTTTGGAACACTGCAAAAGTAGAGCCGGGTTCTATAGTTGCT
GTTTTTGGCCTTGGGACTGTTGGCCTTGCTGTGGCAGAGGGTGCAAAGGC
AGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCGAAAAAGTTTG
ATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGACCAT
GACAAACCCATTCAGCAGGTCGTTGTCGATCTCACGGATGGTGGTGTTGA
CTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTTTGG
AATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCTGCA
TC
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