FC873471

Overview
NameFC873471
Unique NameFC873471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_COTJA (Alcohol dehydrogenase 1 OS=Coturnix coturnix japonica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 8.211e-49
Identity = 96/173 (55.49%), Postives = 117/173 (67.63%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            +M D  +RF+  G+ I+HF+GTSTF++YTVVH+ + AKID  APL+KVCL+GCG  TG GAV  TAKVEPGS  AVFGLG V             SR+I IDI+  KF +AK  G TE VNPKD  KPI +V+ ++T  GVDYSFE IG +  M  AL  CH  +G SVIVGV
Sbjct:  123 LMADGTTRFTCKGKAIHHFIGTSTFTEYTVVHETAAAKIDSAAPLEKVCLIGCGFSTGYGAVLQTAKVEPGSTCAVFGLGGVGLSVVMGCKAAGASRIIAIDINKDKFAKAKELGATECVNPKDFKKPIHEVLTEMTGKGVDYSFEVIGRIETMTEALASCHYNYGVSVIVGV 295          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.072e-48
Identity = 93/172 (54.07%), Postives = 120/172 (69.77%), Query Frame = 2
Query:   29 MNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            M D  SRF+  G+PI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  TG G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +AK  G TE VNP+D+ KPIQ+V+ ++++GGVD+SFE IG +  M  AL CC + +G SVIVGV
Sbjct:  124 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGV 295          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1A_MACMU (Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1A PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 1.401e-48
Identity = 92/172 (53.49%), Postives = 120/172 (69.77%), Query Frame = 2
Query:   29 MNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            + D  SRF+  G+PI+HF+G STFSQYTVV + +VAKID  +P++KVCL+GCG  TG G+    AKV PGS  AVFGLG V             +R+I +DI+  KF +AK  G TE +NP+D+ KPIQ+V+ ++TDGGVD+SFE IG +  M A+L CCH+  GTSVIVGV
Sbjct:  124 LQDGTSRFTCRGKPIHHFLGVSTFSQYTVVDENAVAKIDAASPMEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGV 295          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 1.829e-48
Identity = 94/173 (54.34%), Postives = 117/173 (67.63%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            +M D  +RF+  G+ I+HF+GTSTF++YTVVH+ + AKID  APL+KVCL+GCG  TG GAV  TAKVE GS  AVFGLG V             SR+I +DI+  KF +AK  G TE +NPKD  KPI +V+ ++T  GVDYSFE IG +  M AAL  CH  +G SVIVGV
Sbjct:  124 LMADGTTRFTCKGKAIHHFVGTSTFTEYTVVHETAAAKIDSAAPLEKVCLIGCGFSTGYGAVLQTAKVEAGSTCAVFGLGGVGLSVVMGCKAAGASRIIAVDINKDKFAKAKELGATECINPKDFKKPIHEVLTEMTGQGVDYSFEVIGRIETMTAALASCHNNYGVSVIVGV 296          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 1.829e-48
Identity = 96/174 (55.17%), Postives = 119/174 (68.39%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            ++ D  SRF+  G+P+YHF+ T TF++YTV  + SV KID  APL+KVCL+GCG  TG GA  N+AKV+PGS  AVFGLG V             SR+IGIDI+ +KF +AK  G TE VNP D+ KPI +V+ D+TDG GV+YSFE IG    M AAL  CH  +GTSVIVGV
Sbjct:  122 LLYDGTSRFTYQGKPVYHFVRTGTFTEYTVAPEDSVVKIDASAPLEKVCLIGCGFSTGYGAAINSAKVQPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINKEKFPKAKELGATECVNPLDYKKPINEVLFDMTDGEGVEYSFEVIGRTDTMTAALASCHNNYGTSVIVGV 295          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 1.829e-48
Identity = 93/172 (54.07%), Postives = 120/172 (69.77%), Query Frame = 2
Query:   29 MNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            + D  SRF+   +PI+HF+G STFSQYTVV + +VAKID  +PL+KVCL+GCG  TG G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +AK  G TE +NP+D+ KPIQ+V+ ++TDGGVD+SFE IG +  M A+L CCH+  GTSVIVGV
Sbjct:  124 LQDGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGV 295          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 3.120e-48
Identity = 92/172 (53.49%), Postives = 120/172 (69.77%), Query Frame = 2
Query:   29 MNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            + D   RF+ +G+PI+HF+G STFSQYTVV + +VAKID  +PL+KVCL+GCG  TG G+    AKV PGS  AVFGLG V             +R+I +DI+  KF +AK  G TE +NP+D+ KPIQ+V+ ++TDGGVD+SFE IG +  M A+L CCH+  GTSVIVGV
Sbjct:  124 LQDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGV 295          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 4.075e-48
Identity = 93/170 (54.71%), Postives = 117/170 (68.82%), Query Frame = 2
Query:   35 DRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            D  SRFS  G+PI+HF+ TSTFSQYTVV D++VAKID  APLDKVCL+GCG  TG G+    AKV PGS  AVFGLG V             +++I +DI+  KF +AK  G T+ +NP+D+ KPIQ+V+ ++TDGGVD+SFE IG +  M +AL  CH   G SVIVGV
Sbjct:  127 DGTSRFSCRGKPIHHFISTSTFSQYTVVDDIAVAKIDAAAPLDKVCLIGCGFSTGYGSAVQVAKVTPGSTCAVFGLGGVGLSVVIGCKTAGAAKIIAVDINKDKFAKAKELGATDCINPQDYTKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSALLSCHSACGVSVIVGV 296          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1A_UROHA (Alcohol dehydrogenase 1A OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 5.322e-48
Identity = 99/180 (55.00%), Postives = 121/180 (67.22%), Query Frame = 2
Query:    8 ATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            ATG   +M D  SRF+  G+ ++HF+ TS+F++YTVVH+ SV KID  APL+KVCL+GCG  TG GA   TAKVEPGS  AVFGLG V             SR+IG+DI+  KF +AK  G TE VNP D+ KPI +V+ DLT G GVDYSFE IG    M AAL  CH  +GTS+IVG+
Sbjct:  119 ATG---LMPDGTSRFTCKGKSLHHFISTSSFTEYTVVHENSVVKIDAAAPLEKVCLIGCGFSTGYGAAVETAKVEPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGVDINKDKFPKAKEMGATECVNPLDYKKPINEVLFDLTGGEGVDYSFEVIGRTDTMTAALASCHMDYGTSIIVGL 295          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 9.078e-48
Identity = 92/172 (53.49%), Postives = 118/172 (68.60%), Query Frame = 2
Query:   29 MNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            M D   RF+  G+PI+HF+G STFSQYTVV + +VAKID  +PL+KVCL+GCG  TG G     AKV PGS  AVFGLG V             +R+I +DI+  KF +AK  G TE +NP+D+ KPIQ+V+ ++TDGGVD+SFE IG +  + A+L CCH+  GTSVIVGV
Sbjct:  124 MQDGTRRFTCGGKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGPAVKVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTIMASLLCCHEACGTSVIVGV 295          
The following BLAST results are available for this feature:
BLAST of FC873471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ADH1_COTJA8.211e-4955.49Alcohol dehydrogenase 1 OS=Coturnix coturnix japon... [more]
ADH1E_HORSE1.072e-4854.07Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
ADH1A_MACMU1.401e-4853.49Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1... [more]
ADH1_CHICK1.829e-4854.34Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
ADH1B_UROHA1.829e-4855.17Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
ADH1A_HUMAN1.829e-4854.07Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADH1G_HUMAN3.120e-4853.49Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
ADH1_RAT4.075e-4854.71Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]
ADH1A_UROHA5.322e-4855.00Alcohol dehydrogenase 1A OS=Uromastyx hardwickii P... [more]
ADH1G_PAPHA9.078e-4853.49Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CE02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873471 ID=FC873471; Name=FC873471; organism=Citrus clementina; type=EST; length=552bp
TAGGGGTGCCACTGGTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTT
TCTCGATAAATGGACAGCCTATCTATCACTTCATGGGAACCTCAACATTT
AGCCAGTACACAGTTGTGCATGATGTTAGTGTTGCAAAGATTGACCCACA
AGCTCCTTTGGACAAAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTC
TTGGAGCAGTTTGGAACACTGCAAAAGTAGAGCCGGGTTCTATAGTTGCT
GTTTTTGGCCTTGGGACTGTTGGCCTTGCTGTGGCAGAGGGTGCAAAGGC
AGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCGAAAAAGTTTG
ATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGACCAT
GACAAACCCATTCAGCAGGTCGTTGTCGATCTCACGGATGGTGGTGTTGA
CTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTTTGG
AATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCTGCA
TC
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