FC873471

Overview
NameFC873471
Unique NameFC873471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH6_HUMAN (Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 2.641e-47
Identity = 89/173 (51.45%), Postives = 120/173 (69.36%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            +M+D  SRF+  G+ IYHF  TSTF +YTV+ ++SVAKID  APL+KVCL+ CG  TG GA  NTAKV PGS  AVFGLG V             +R+IG+D++ +KF +A+  G TE +NP+D  KPIQ+V+ D+TD G+D+ FE IGN+ V+ AAL  C++ +G  V+VGV
Sbjct:  123 LMSDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIGVDVNKEKFKKAQELGATECLNPQDLKKPIQEVLFDMTDAGIDFCFEAIGNLDVLAAALASCNESYGVCVVVGV 295          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_APTAU (Alcohol dehydrogenase 1 OS=Apteryx australis GN=ADH1 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 2.641e-47
Identity = 95/176 (53.98%), Postives = 119/176 (67.61%), Query Frame = 2
Query:   17 AGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            A  +M D  +RF+  G+ I+HF+GTSTF++YTVVH+ +VAKI   APL+KVCL+GCG  TG GA   TAKVEPGS  AVFGLG V             SR+I IDI+  KF +AK  G T+ VNPKD  KPI +V++++T  GVDYSFE IG+   M AAL  CH  +G SVI+GV
Sbjct:  120 ASGLMPDGTTRFTCKGKAIHHFIGTSTFTEYTVVHETAVAKIAAAAPLEKVCLIGCGFSTGYGAAVQTAKVEPGSTCAVFGLGGVGLSVVMGCKAAGASRIIAIDINKDKFAKAKELGATDCVNPKDFTKPIHEVLMEMTGLGVDYSFEVIGHTETMAAALASCHFNYGVSVILGV 295          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHL3_ARATH (Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.450e-47
Identity = 90/183 (49.18%), Postives = 119/183 (65.03%), Query Frame = 2
Query:   23 VMMNDRKSRFSIN---------GQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            VM+ND  +RFS            QPIYHF+ TSTF++YTV+    V KIDP +PL ++ LL CGV TG+GA WN A V+ G   AVFGLG+V             SR+IG+D +  KF++ K  GVT+F+NPKD  KP+ Q++ ++T GGVDYSFEC GNV V+R A    H GWG++V+VG+
Sbjct:  126 VMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLKQMSLLSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAVAEGARARGASRIIGVDANASKFEKGKLMGVTDFINPKDLTKPVHQMIREITGGGVDYSFECTGNVDVLREAFLSTHVGWGSTVLVGI 308          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.505e-47
Identity = 88/173 (50.87%), Postives = 120/173 (69.36%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            +M+D  SRF+  G+ IYHF  TSTF +YTV+ ++SVAKID  APL+KVCL+ CG  TG GA  NTAKV PGS  AVFGLG V             +R+IG+D++ +KF +A+  G TE +NP+D  KPIQ+V+ D+TD G+D+ FE IGN+ V+ AAL  C++ +G  V+VG+
Sbjct:  123 LMSDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKVTPGSTCAVFGLGGVGSSVVMGCKAAGATRIIGVDVNKEKFKKARELGATECLNPQDLKKPIQEVLFDMTDAGIDFCFEAIGNLDVLAAALASCNESYGVCVVVGL 295          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 7.685e-47
Identity = 86/172 (50.00%), Postives = 118/172 (68.60%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 541
            +M DR SRF+  G+ IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GCG  +G GA  NTAKV PGS  AVFGLG V             SR+I IDI+ +KF +AK  G T+ +NP++ DKP+Q V+ +LT GGVDYS +C G    ++AA++C   GWG+  +VG
Sbjct:  127 LMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVG 298          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHP_RABIT (Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctolagus cuniculus GN=ADH2-1 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.311e-46
Identity = 88/173 (50.87%), Postives = 117/173 (67.63%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            +M D+ SRF+  G+ IYHF G S FSQYTVV DV++AKID  A L++VCL+GCG  TG GA  NTAKV PGS  AVFGLG V             SR+I IDI+  KF +AK  G T+ +NP++ +KP+Q V+V++T+GGVD++ +C G   VM+A ++C   GWG+   VGV
Sbjct:  128 LMEDKTSRFTCKGKSIYHFFGISAFSQYTVVKDVNLAKIDDDANLERVCLIGCGFSTGYGAAINTAKVTPGSTCAVFGLGGVGLSAIMGCKTAGASRIIAIDINSDKFAKAKALGATDCLNPRELNKPVQDVIVEMTNGGVDFAIDCAGGSEVMKATVDCATVGWGSCTFVGV 300          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 2.920e-46
Identity = 90/172 (52.33%), Postives = 117/172 (68.02%), Query Frame = 2
Query:   29 MNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            + +  SRFS  G+ I++F+ TSTFSQYTVV D++VAKID  +PLDKVCL+GCG  TG G+    AKV PGS  AVFGLG V             +R+I +DI+  KF +AK  G TE +NP+D+ KPIQ+V+ ++TDGGVD+SFE IG +  M +AL  CH   G SV+VGV
Sbjct:  124 LREGTSRFSCKGKQIHNFISTSTFSQYTVVDDIAVAKIDGASPLDKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVIIGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYSKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSALLSCHAACGVSVVVGV 295          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 4.981e-46
Identity = 85/172 (49.42%), Postives = 117/172 (68.02%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 541
            +M DR SRF+   + IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GCG  +G GA  NTAKV PGS  AVFGLG V             SR+I IDI+ +KF +AK  G T+ +NP+D DKP+Q V+ +LT GGVD+S +C G    ++AA++C   GWG+  +VG
Sbjct:  127 LMEDRTSRFTSKERSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFTSGYGAAINTAKVTPGSACAVFGLGCVGLSAVIGCKIAGASRIIAIDINSEKFPKAKALGATDCLNPRDLDKPVQDVITELTGGGVDFSLDCAGTAQTLKAAVDCTVVGWGSCTVVG 298          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FADH_PARDE (S-(hydroxymethyl)glutathione dehydrogenase OS=Paracoccus denitrificans GN=flhA PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 8.497e-46
Identity = 93/189 (49.21%), Postives = 126/189 (66.67%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFS-INGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTD------GGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            R   G G +M D  SRFS ++G PI+H+MG STFS YTV+ +++VAK+   AP DK+C +GCGV TG+GAV NTAKVE G+   VFGLG +               +IG+D++  K   A++FG+T F+NPK+ +  +Q+ +V+LT       GG DYSF+C GNV VMR ALEC H+GWG S+I+GVA
Sbjct:  110 RATQGQG-LMPDGTSRFSMLDGTPIFHYMGCSTFSNYTVLPEIAVAKVREDAPFDKICYIGCGVTTGIGAVINTAKVEIGAKAVVFGLGGIGLNVLQGLRLAGADMIIGVDLNDDKKPMAEHFGMTHFINPKNCENVVQE-IVNLTKTPFDQIGGADYSFDCTGNVKVMRDALECTHRGWGQSIIIGVA 296          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHQ_RABIT (Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctolagus cuniculus GN=ADH2-2 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.449e-45
Identity = 85/173 (49.13%), Postives = 117/173 (67.63%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            +M+D+ SRF+  G+ IYHF+G S FSQYTVV D+++AKID  A L +VCL+GCG  TG GA  N AKV PGS  AVFGLG V             SR+I +DI+  KF +AK  G T+ +NP++ +KP+Q V+V++T+GGVD++ +C G   VM+A ++C   GWG+   VGV
Sbjct:  128 LMDDKTSRFTCKGKSIYHFLGISAFSQYTVVKDINLAKIDDDANLKRVCLIGCGFSTGYGAAINDAKVTPGSTCAVFGLGGVGLSAVIGCKTAGASRIIAVDINSDKFAKAKALGATDCLNPRELNKPVQDVIVEMTNGGVDFAIDCAGGSEVMKATVDCTTVGWGSCTFVGV 300          
The following BLAST results are available for this feature:
BLAST of FC873471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ADH6_HUMAN2.641e-4751.45Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE... [more]
ADH1_APTAU2.641e-4753.98Alcohol dehydrogenase 1 OS=Apteryx australis GN=AD... [more]
ADHL3_ARATH3.450e-4749.18Alcohol dehydrogenase-like 3 OS=Arabidopsis thalia... [more]
ADH6_PONAB4.505e-4750.87Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH4_MOUSE7.685e-4750.00Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
ADHP_RABIT1.311e-4650.87Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctol... [more]
ADH1_MOUSE2.920e-4652.33Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE... [more]
ADH4_RAT4.981e-4649.42Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
FADH_PARDE8.497e-4649.21S-(hydroxymethyl)glutathione dehydrogenase OS=Para... [more]
ADHQ_RABIT1.449e-4549.13Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctol... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CE02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873471 ID=FC873471; Name=FC873471; organism=Citrus clementina; type=EST; length=552bp
TAGGGGTGCCACTGGTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTT
TCTCGATAAATGGACAGCCTATCTATCACTTCATGGGAACCTCAACATTT
AGCCAGTACACAGTTGTGCATGATGTTAGTGTTGCAAAGATTGACCCACA
AGCTCCTTTGGACAAAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTC
TTGGAGCAGTTTGGAACACTGCAAAAGTAGAGCCGGGTTCTATAGTTGCT
GTTTTTGGCCTTGGGACTGTTGGCCTTGCTGTGGCAGAGGGTGCAAAGGC
AGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCGAAAAAGTTTG
ATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGACCAT
GACAAACCCATTCAGCAGGTCGTTGTCGATCTCACGGATGGTGGTGTTGA
CTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTTTGG
AATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCTGCA
TC
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