FC873471

Overview
NameFC873471
Unique NameFC873471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.449e-45
Identity = 91/189 (48.15%), Postives = 123/189 (65.08%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFS-INGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTD------GGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            RG  G G +M D  SRFS ++G PI H+MG STFS YTV+ +++VAK+ P AP DK+C +GCGV TG+GAV NTAKVE G+   VFGLG +               +IG+D++  K +  + FG+T FVNP + D  +   +V++T       GG DY+F+C GNV VMR ALE CH+GWG S+++GVA
Sbjct:  110 RGTQGQG-LMPDGTSRFSMLDGTPILHYMGCSTFSNYTVLPEIAVAKVRPDAPFDKICYIGCGVTTGIGAVINTAKVEIGAKAVVFGLGGIGLNVIQGLKLAGADMIIGVDLNNAKKEWGERFGMTHFVNPSEIDGDVVAHLVNMTKTPFDQIGGADYTFDCTGNVKVMRQALEACHRGWGQSIVIGVA 297          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.229e-45
Identity = 92/185 (49.73%), Postives = 115/185 (62.16%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPK--DHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            R   G G ++ D  SRF   G+ ++H+MG S+FSQYTVV D+SV K+  +AP DK CLLGCGV TG GA  NTAK+  G  + VFG G +             S +I IDI+  K   A  FG T+FVNP        I   ++D+TDGG DY+F+C GNV VMR ALE CHKGWG S+I+GVAA
Sbjct:  117 RATQGKG-LLPDGTSRFRCKGKDLFHYMGCSSFSQYTVVADISVVKVQDEAPKDKTCLLGCGVTTGYGAAINTAKISKGDKIGVFGAGCIGLSVIQGAVSKGASEIIVIDINDSKKAWADQFGATKFVNPTTLPEGTNIVDYLIDITDGGFDYTFDCTGNVQVMRNALESCHKGWGESIIIGVAA 300          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHL4_ARATH (Alcohol dehydrogenase-like 4 OS=Arabidopsis thaliana GN=At1g64710 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.217e-45
Identity = 84/178 (47.19%), Postives = 120/178 (67.42%), Query Frame = 2
Query:   23 VMMNDRKSRF--SINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            VM+ D K+RF  S + +PIYHF+ TSTFS+YTV+    V K+DP  PL+K+ LL CGV TG+GA WN A ++P S VA+FGLG V             S++IGIDI+P KF   +  G++EF+NPK+ DK + + V+++T+GGV+YSFEC G++  +R A    + G G +V++GV A
Sbjct:  125 VMVTDGKTRFFTSKDNKPIYHFLNTSTFSEYTVIDSACVLKVDPLFPLEKISLLSCGVSTGVGAAWNVADIQPASTVAIFGLGAVGLAVAEGARARGASKIIGIDINPDKFQLGREAGISEFINPKESDKAVHERVMEITEGGVEYSFECAGSIEALREAFLSTNSGVGVTVMLGVHA 302          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_RANPE (Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.193e-45
Identity = 89/176 (50.57%), Postives = 122/176 (69.32%), Query Frame = 2
Query:   20 GVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            GV++ D+ SRF+  G+ I++F+ TSTF++YTV+ +++VAKI   APL+KVCL+GCG  TG G+  NT KV+PGS  AVFGLG V             SR+IG+D++  KF  AK  G TE +NPKD++ PI +V+  +TD GVDY+FE IGN +VM +AL   H G G +VIVG+A
Sbjct:  122 GVLL-DKTSRFTCKGKSIHNFISTSTFTEYTVLDEIAVAKIHEDAPLEKVCLIGCGFSTGYGSAVNTGKVKPGSTCAVFGLGGVGLSVIIGCKVAGASRIIGVDLNSDKFTTAKECGATECINPKDYNIPIHEVLAKMTDDGVDYAFEVIGNTTVMTSALSSSHFGCGKTVIVGLA 296          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.227e-44
Identity = 95/185 (51.35%), Postives = 116/185 (62.70%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPK--DHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            R   G GVM  D  SRF+  G+ I HFMG STFSQYTVV D+SV  I+P+A  DK CLLGCG+ TG GA   TA V+ G  VAVFG G V             +++I +DI  KK +  +  G T FVNP        I   ++++TDGG D++F+C GNV VMR ALE CHKGWGTSVI+GVAA
Sbjct:  119 RATQGKGVMP-DGTSRFTCKGKEILHFMGCSTFSQYTVVADISVVAINPKAEFDKACLLGCGITTGYGAATITANVQKGDNVAVFGGGIVGLSVIQGCAERGAAQIILVDISDKKEEWGQKLGATAFVNPTKLPEGTTIVDKLIEMTDGGCDFTFDCTGNVGVMRNALEACHKGWGTSVIIGVAA 302          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH8_RANPE (NADP-dependent alcohol dehydrogenase OS=Rana perezi GN=ADH8 PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 2.093e-44
Identity = 88/175 (50.29%), Postives = 118/175 (67.43%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            +M D  SRF+  G+PIY+ +GTSTF++YTVV D++VAKIDP+APL+  CL+GCG  TG GA  NTAKV PGS  AVFGLG V             SR+IG+     KF +A   G TE +NPKD+DKPI +V+ + T+GGVDY+ EC G +  M  AL+  + G G +V++G+A+
Sbjct:  123 LMADMTSRFTCRGKPIYNLVGTSTFTEYTVVADIAVAKIDPKAPLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLAS 296          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 2.093e-44
Identity = 90/177 (50.85%), Postives = 115/177 (64.97%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 541
            TG GV+  D  +RF+  G+P+ HFM TSTF++YTV+ + SVAKID +AP +K CL+GCG  TG GA   TAKV PGS  AVFGLG V             SR+IGIDI+  KF +A + G TE +NP+D  KPI +V+ D+T   V Y+FE IG +  M  AL  CH  +GTSV+VG
Sbjct:  118 TGRGVLA-DGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKIDAEAPPEKACLIGCGFSTGYGAAVKTAKVSPGSTCAVFGLGGVGLSVVMGCKAAGASRIIGIDINKDKFQKALDVGATECINPRDFTKPISEVLSDMTGNTVQYTFEVIGRLETMVDALSSCHMNYGTSVVVG 293          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 2.093e-44
Identity = 88/170 (51.76%), Postives = 115/170 (67.65%), Query Frame = 2
Query:   35 DRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            D  SRF+  G+ I++F+ TSTFSQYTVV +++VAKID  +PL+KVCL+GCG  TG G+    AKV PGS  AVFGLG V             +R+I +DI+  KF +AK  G TE +NP D+ KPIQ+V+ ++TDGGVD+SFE IG +  M ++L  CH   G SVIVGV
Sbjct:  126 DGTSRFTCRGKAIHNFISTSTFSQYTVVDEMAVAKIDGASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVIIGCKAAGAARIIAVDINKDKFAKAKELGATECINPLDYSKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSSLLSCHASCGVSVIVGV 295          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.662e-44
Identity = 89/178 (50.00%), Postives = 117/178 (65.73%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            TG GV+  D  +RF+  G+P++HFM TSTF++YTVV + SVAKID  AP +KVCL+GCG  TG GA   T KV+PGS   VFGLG V             SR+IGID++  KF++A   G TE ++PKD  KPI +V+ ++T   V Y+FE IG++  M  AL  CH  +GTSV+VGV
Sbjct:  118 TGRGVLA-DGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGV 294          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.314e-43
Identity = 92/183 (50.27%), Postives = 117/183 (63.93%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            R   G G +M D  SRFS   + + H+MG S+FSQYTVV D+S+  I   APL  +CLLGCGV TG GAV ++AKVE GS VAV G G V             SR+I IDI+  K   AK FG T+F++     K + Q V+D+TDGGVDY+F+C GNV+VM+  L+ CHKGWG   ++GVAA
Sbjct:  117 RETQGRG-LMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTTGFGAVTHSAKVESGSTVAVVGCGCVGLAAMQGAVAAGASRIIAIDINADKEVYAKKFGATDFID-SSKVKDLVQYVIDVTDGGVDYAFDCTGNVTVMQQELQFCHKGWGKLCVIGVAA 297          
The following BLAST results are available for this feature:
BLAST of FC873471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ADHI_RHOS41.449e-4548.15Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]
FADH_PICPA3.229e-4549.73S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
ADHL4_ARATH4.217e-4547.19Alcohol dehydrogenase-like 4 OS=Arabidopsis thalia... [more]
ADH1_RANPE7.193e-4550.57Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1[more]
FADH_CANMA1.227e-4451.35S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]
ADH8_RANPE2.093e-4450.29NADP-dependent alcohol dehydrogenase OS=Rana perez... [more]
ADH7_RAT2.093e-4450.85Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADH1_PERMA2.093e-4451.76Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
ADH7_HUMAN4.662e-4450.00Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
FADH1_SCHPO2.314e-4350.27Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CE02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873471 ID=FC873471; Name=FC873471; organism=Citrus clementina; type=EST; length=552bp
TAGGGGTGCCACTGGTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTT
TCTCGATAAATGGACAGCCTATCTATCACTTCATGGGAACCTCAACATTT
AGCCAGTACACAGTTGTGCATGATGTTAGTGTTGCAAAGATTGACCCACA
AGCTCCTTTGGACAAAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTC
TTGGAGCAGTTTGGAACACTGCAAAAGTAGAGCCGGGTTCTATAGTTGCT
GTTTTTGGCCTTGGGACTGTTGGCCTTGCTGTGGCAGAGGGTGCAAAGGC
AGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCGAAAAAGTTTG
ATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGACCAT
GACAAACCCATTCAGCAGGTCGTTGTCGATCTCACGGATGGTGGTGTTGA
CTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTTTGG
AATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCTGCA
TC
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