FC873504

Overview
NameFC873504
Unique NameFC873504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: HECD2_PONAB (Probable E3 ubiquitin-protein ligase HECTD2 OS=Pongo abelii GN=HECTD2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.964e-13
Identity = 48/158 (30.38%), Postives = 79/158 (50.00%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            +F +GF+ V    +L +  P E++ L+CG  +L +  AL    ++D GY      I    +++  F  D Q+    F TG+ R+P GG+A LN K++                   +E++ + LP   TC N L LPPY +K+ + +KL+  IS  +G
Sbjct:  635 AFYYGFHSVCASNALMLLRPEEVEILVCGSPDL-DMHALQRSTQYD-GYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLNFKIS------------------KNETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGISNSEG 772          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: HECD2_HUMAN (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.964e-13
Identity = 48/158 (30.38%), Postives = 79/158 (50.00%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            +F +GF+ V    +L +  P E++ L+CG  +L +  AL    ++D GY      I    +++  F  D Q+    F TG+ R+P GG+A LN K++                   +E++ + LP   TC N L LPPY +K+ + +KL+  IS  +G
Sbjct:  635 AFYYGFHSVCASNALMLLRPEEVEILVCGSPDL-DMHALQRSTQYD-GYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLNFKIS------------------KNETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGISNSEG 772          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.171e-12
Identity = 54/168 (32.14%), Postives = 77/168 (45.83%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDD------LPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            +F+ GFN+V  +  L+ F   EL+ +LCG +E+    W+  A+  H      YT  S  I    +++ E   +++    QFVTG  RLP GG A L                      GP +   D       LP   TC N L LPPY + E + +KL+YAI E +G
Sbjct:  723 AFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKNAIYRH------YTKSSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGGFAEL------------------IGSNGPQKFCIDRVGKETWLPRSHTCFNRLDLPPYKSYEQLKEKLLYAIEETEG 866          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: WWP2_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens GN=WWP2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.171e-12
Identity = 53/168 (31.55%), Postives = 77/168 (45.83%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDD------LPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            +F+ GFN+V  +  L+ F   EL+ +LCG +E+    W+ + +  H      YT  S  I    +++ E   +++    QFVTG  RLP GG A L                      GP +   D       LP   TC N L LPPY + E + +KL+YAI E +G
Sbjct:  723 AFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKSTIYRH------YTKNSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGGFAEL------------------IGSNGPQKFCIDKVGKETWLPRSHTCFNRLDLPPYKSYEQLREKLLYAIEETEG 866          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: UPL7_ARATH (E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 52/163 (31.90%), Postives = 72/163 (44.17%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 491
            +F  G   +     L++F  HE + LL G     +   L  + K+  GY+  S  I    E+M  F P ++    +FVT   R P  G   L P   I +    T+   A  G        + LPS  TC N LKLP Y     M +KL+YAI+   G F+LS
Sbjct:  986 AFYRGLTDLISPAWLKLFNAHEFNQLLSGGNHDIDVDDLRRNTKYTGGYSDSSRTIKIFWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQPTFIIHKVSCDTSLWAAIGGQDV-----ERLPSASTCYNTLKLPTYKRASTMREKLLYAITSNAG-FELS 1142          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.608e-12
Identity = 48/160 (30.00%), Postives = 83/160 (51.88%), Query Frame = 3
Query:    6 FIFGFNQVF-DITSLQIFTPHELDHLLCGRREL--WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            F+ GF +VF +  S+++F   EL+ L+CG  E   ++  +L    K+  G++  S A+    EI+  +    Q+   QFVT + R+P  G++ +  K++++  H S                 DDLP   TC N + L  YS+K+ +  KL++AI+E +G
Sbjct:  746 FVSGFKRVFAECNSIKLFNSEELERLVCGDEEQTKFDFKSLRSVTKYVGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTASDRIPATGISTIPFKISLLGSHDS-----------------DDLPLAHTCFNEICLWNYSSKKKLELKLLWAINESEG 888          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: ITCH_MOUSE (E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.406e-12
Identity = 53/168 (31.55%), Postives = 76/168 (45.24%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSE------SADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            +F  GFN++     LQ F   EL+ LLCG +E+    W+  A+  H      YT  S  I+   + + E   +++    QFVTG  RLP GG A L                      GP +        ++ LP   TC N L LPPY + E + +KL++AI E +G
Sbjct:  717 AFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAIYRH------YTRTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADL------------------MGSNGPQKFCIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEG 860          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: WWP1_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus musculus GN=Wwp1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.811e-12
Identity = 53/168 (31.55%), Postives = 75/168 (44.64%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSE------SADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            +F+ GFN+V  +  LQ F   EL+ +LCG +E+    W+   +  H      YT  S  I+   + + E   + +    QFVTG  RLP GG A L                      GP +        D  LP   TC N L LPPY + E + +KL++AI E +G
Sbjct:  771 AFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH------YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAEL------------------MGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEG 914          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: WWP1_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Homo sapiens GN=WWP1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.811e-12
Identity = 53/168 (31.55%), Postives = 75/168 (44.64%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSE------SADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            +F+ GFN+V  +  LQ F   EL+ +LCG +E+    W+   +  H      YT  S  I+   + + E   + +    QFVTG  RLP GG A L                      GP +        D  LP   TC N L LPPY + E + +KL++AI E +G
Sbjct:  775 AFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH------YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAEL------------------MGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEG 918          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: UBE3B_HUMAN (Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.811e-12
Identity = 55/172 (31.98%), Postives = 79/172 (45.93%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMG-EFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTI----VRKHSSTAPNTASNGTG----PSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 491
            + I GF  +     +++F+  EL  L+ G     +   L +H  +  G+      I+ L +I+  +FTPD++  F +FVT   R P  G A L P  +I    V     T     S   G            LP+  TC N LKLP YS K ++ +KL YAIS   G F+LS
Sbjct:  898 ALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPDERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAISMNTG-FELS 1068          
The following BLAST results are available for this feature:
BLAST of FC873504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
HECD2_PONAB8.964e-1330.38Probable E3 ubiquitin-protein ligase HECTD2 OS=Pon... [more]
HECD2_HUMAN8.964e-1330.38Probable E3 ubiquitin-protein ligase HECTD2 OS=Hom... [more]
WWP2_MOUSE1.171e-1232.14NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus... [more]
WWP2_HUMAN1.171e-1231.55NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Hom... [more]
UPL7_ARATH1.997e-1231.90E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis th... [more]
HUL4_YEAST2.608e-1230.00Probable E3 ubiquitin-protein ligase HUL4 OS=Sacch... [more]
ITCH_MOUSE3.406e-1231.55E3 ubiquitin-protein ligase Itchy OS=Mus musculus ... [more]
WWP1_MOUSE5.811e-1231.55NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus... [more]
WWP1_HUMAN5.811e-1231.55NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Hom... [more]
UBE3B_HUMAN5.811e-1231.98Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BC05FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873504 ID=FC873504; Name=FC873504; organism=Citrus clementina; type=EST; length=819bp
AATCTTTTATATTTGGATTCAATCAGGTCTTTGACATCACATCATTACAA
ATATTTACTCCTCATGAATTGGACCATCTGCTTTGTGGCCGTAGAGAGTT
GTGGGAGCCTGCGGCGCTTGCTGAGCATATAAAATTCGATCATGGATACA
CTGCCAAGAGTCCTGCAATTGTTAACTTACTAGAGATCATGGGAGAATTC
ACACCAGATCAGCAGCGTGCCTTCTGTCAGTTTGTTACTGGTGCACCTCG
TCTTCCACCGGGTGGGTTGGCGGTGCTGAATCCAAAGCTTACCATTGTCA
GAAAGCATTCTTCAACTGCACCTAATACAGCATCAAATGGAACCGGGCCT
TCGGAATCAGCGGATGATGACTTGCCAAGTGTCATGACTTGTGCCAATTA
CCTGAAGCTTCCTCCTTACTCTACCAAGGAAATTATGTACAAGAAACTGG
TTTATGCAATAAGCGAAGGGCAGGGATCTTTTGATCTGTCATGAGTTCTC
AAAACTAACCGATGGACCTTTGTATATTAATATATGTGTCATCAAGTCAA
TTCTCTTACCTGGGGATTATTCATCTTTGAAAGTAGCATCATATTTCAGT
CAAATAATGGCTGCTTTTCACTGCCCTTGTATCAATGTTCACATCATTGG
CAAGTTGATTTTTTTTGTTTCAGGTCAGACTTCAGGCTGCCCCAGTGCCA
CACTCTCTCAACAGAGATTTGAAGAGGGAAATTGTGGAGCAGTTTTTTGG
CTGCTGCTAGGACTTTGTATATAAAATAGGAAACTTAAAATTTTTTGTCT
TTTTTCCCTCCATTGACAA
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