FC873504

Overview
NameFC873504
Unique NameFC873504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: HUL5_YEAST (Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces cerevisiae GN=HUL5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.589e-12
Identity = 49/149 (32.89%), Postives = 74/149 (49.66%), Query Frame = 3
Query:   45 LQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 491
            +++F   EL  L+ G R+  +   L  + ++  GY  +   IV+  E++ EF  +++  F +FVT  P+ P  G   L+PK  I            + GT         LP+  TC N LKLP Y  K I+ +KL+YAI+ G   FDLS
Sbjct:  780 MEMFNSIELQMLISGERDNIDLDDLKSNTEYG-GYKEEDQTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAPLQGFKALDPKFGI-----------RNAGTEKYR-----LPTASTCVNLLKLPDYRNKTILREKLLYAINSG-ARFDLS 910          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: HUL4_ASHGO (Probable E3 ubiquitin-protein ligase HUL4 OS=Ashbya gossypii GN=HUL4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.911e-12
Identity = 47/159 (29.56%), Postives = 72/159 (45.28%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHI-KFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            SF  GF  V +  S ++F   EL+ L+CG  E     ++   + ++  G+   SP +    EI+ E    QQR    FVTG+ R+P  G+  +  +++ +R                  S  D LP   TC N + L  Y  KE +  KL+ A+ E QG
Sbjct:  695 SFRNGFFHVIEGNSFRLFGSEELEQLVCGSNEQSLDVSMLRSVTRYQGGFDDNSPVVQWFWEILSEMEYPQQRKLLHFVTGSDRVPATGVTTIPFRISRIR------------------SGADRLPLSHTCFNEICLHEYKDKETLRNKLIIALEESQG 835          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: ITCH_HUMAN (E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.294e-11
Identity = 52/168 (30.95%), Postives = 75/168 (44.64%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSE------SADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            +F  GFN++     LQ F   EL+ LLCG +E+    W+  A+  H      Y   S  I+   + + E   +++    QFVTG  RLP GG A L                      GP +        ++ LP   TC N L LPPY + E + +KL++AI E +G
Sbjct:  756 AFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAIYRH------YARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADL------------------MGSNGPQKFCIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEG 899          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: UBE3B_MOUSE (Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.691e-11
Identity = 54/172 (31.40%), Postives = 79/172 (45.93%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMG-EFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTI----VRKHSSTAPNTASNGTG----PSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 491
            + I GF  +     +++F+  EL  L+ G     +   L +H  +  G+      I+ L +I+  +FTP+++  F +FVT   R P  G A L P  +I    V     T     S   G            LP+  TC N LKLP YS K ++ +KL YAIS   G F+LS
Sbjct:  900 ALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPEERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAISMNTG-FELS 1070          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: HECD2_MOUSE (Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus musculus GN=Hectd2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.691e-11
Identity = 47/158 (29.75%), Postives = 78/158 (49.37%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            +F  GF+ V    +L +  P E++ L+CG  EL +  AL    ++D GY      I    +++  F  + Q+    F TG+ R+P GG+A LN K++                   +E++ + LP   TC N L LPPY +++ + +KL+  IS  +G
Sbjct:  633 AFYCGFHSVCASNALMLLRPEEVEILVCGSPEL-DMHALQRSTQYD-GYAKTDLTIRYFWDVVLGFPLELQKKLLHFTTGSDRVPVGGMADLNFKIS------------------KNETSTNWLPVAHTCFNQLCLPPYKSRKDLKQKLIIGISNSEG 770          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: HACE1_HUMAN (E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens GN=HACE1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.691e-11
Identity = 45/163 (27.61%), Postives = 82/163 (50.31%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 491
            +F+ GF+     + +Q+F  +EL+ LL G  E+ + +   ++ ++  GY  + P I    E++ + T +++    QFVTG+ R+P GG A +     +     +  P T +            LP+  TC N LKLP Y +KEI+  +L+ A+  G   + ++
Sbjct:  759 AFLQGFHMFIPPSLIQLFDEYELELLLSGMPEI-DVSDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGSSRVPHGGFANIMGGSGLQNFTIAAVPYTPNL-----------LPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYTMA 909          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: PUB2_SCHPO (E3 ubiquitin-protein ligase pub2 OS=Schizosaccharomyces pombe GN=pub2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.766e-11
Identity = 48/156 (30.77%), Postives = 73/156 (46.79%), Query Frame = 3
Query:   15 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFD--HGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            G N++   + LQIF  +ELD LL G+R++     + +  +F     YT     ++   E++ E++P+++    QF TG  RLP  G   +         H S  P      T         LP   TC N L +PPY++KE + +KL  AI E  G
Sbjct:  528 GLNELIPDSVLQIFNENELDTLLNGKRDI----DVQDWKRFTDYRSYTETDDIVIWFWELLSEWSPEKKAKLLQFATGTSRLPLSGFKDM---------HGSDGPRKF---TIEKVGHISQLPKAHTCFNRLDIPPYNSKEELEQKLTIAIQETAG 667          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: HACE1_MOUSE (E3 ubiquitin-protein ligase HACE1 OS=Mus musculus GN=Hace1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.766e-11
Identity = 45/163 (27.61%), Postives = 81/163 (49.69%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 491
            +F+ GF+     + +Q+F  +EL+ LL G  E+ +     ++ ++  GY  + P I    E++ + T +++    QFVTG+ R+P GG A +     +     +  P T +            LP+  TC N LKLP Y +KEI+  +L+ A+  G   + ++
Sbjct:  759 AFLQGFHMFIPPSLIQLFDEYELELLLSGMPEI-DVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGSSRVPHGGFANIMGGSGLQNFTIAAVPYTPNL-----------LPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYTMA 909          
The following BLAST results are available for this feature:
BLAST of FC873504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
HUL5_YEAST7.589e-1232.89Probable E3 ubiquitin-protein ligase HUL5 OS=Sacch... [more]
HUL4_ASHGO9.911e-1229.56Probable E3 ubiquitin-protein ligase HUL4 OS=Ashby... [more]
ITCH_HUMAN1.294e-1130.95E3 ubiquitin-protein ligase Itchy homolog OS=Homo ... [more]
UBE3B_MOUSE1.691e-1131.40Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ub... [more]
HECD2_MOUSE1.691e-1129.75Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus... [more]
HACE1_HUMAN1.691e-1127.61E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens ... [more]
PUB2_SCHPO3.766e-1130.77E3 ubiquitin-protein ligase pub2 OS=Schizosaccharo... [more]
HACE1_MOUSE3.766e-1127.61E3 ubiquitin-protein ligase HACE1 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BC05FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873504 ID=FC873504; Name=FC873504; organism=Citrus clementina; type=EST; length=819bp
AATCTTTTATATTTGGATTCAATCAGGTCTTTGACATCACATCATTACAA
ATATTTACTCCTCATGAATTGGACCATCTGCTTTGTGGCCGTAGAGAGTT
GTGGGAGCCTGCGGCGCTTGCTGAGCATATAAAATTCGATCATGGATACA
CTGCCAAGAGTCCTGCAATTGTTAACTTACTAGAGATCATGGGAGAATTC
ACACCAGATCAGCAGCGTGCCTTCTGTCAGTTTGTTACTGGTGCACCTCG
TCTTCCACCGGGTGGGTTGGCGGTGCTGAATCCAAAGCTTACCATTGTCA
GAAAGCATTCTTCAACTGCACCTAATACAGCATCAAATGGAACCGGGCCT
TCGGAATCAGCGGATGATGACTTGCCAAGTGTCATGACTTGTGCCAATTA
CCTGAAGCTTCCTCCTTACTCTACCAAGGAAATTATGTACAAGAAACTGG
TTTATGCAATAAGCGAAGGGCAGGGATCTTTTGATCTGTCATGAGTTCTC
AAAACTAACCGATGGACCTTTGTATATTAATATATGTGTCATCAAGTCAA
TTCTCTTACCTGGGGATTATTCATCTTTGAAAGTAGCATCATATTTCAGT
CAAATAATGGCTGCTTTTCACTGCCCTTGTATCAATGTTCACATCATTGG
CAAGTTGATTTTTTTTGTTTCAGGTCAGACTTCAGGCTGCCCCAGTGCCA
CACTCTCTCAACAGAGATTTGAAGAGGGAAATTGTGGAGCAGTTTTTTGG
CTGCTGCTAGGACTTTGTATATAAAATAGGAAACTTAAAATTTTTTGTCT
TTTTTCCCTCCATTGACAA
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