FC873533

Overview
NameFC873533
Unique NameFC873533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: Y1518_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51860 OS=Arabidopsis thaliana GN=At1g51860 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.288e-18
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  483 KATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLHG 761
            K T  F  +R+LG+GGFG VYHG +D G EVAVK+L+ ++  G +EF AEVE+L R+HHR+LV L+G C +G    L+YE + +G +  ++ G
Sbjct:  581 KMTNNF--ERVLGKGGFGTVYHGNLD-GAEVAVKMLSHSSAQGYKEFKAEVELLLRVHHRHLVGLVGYCDDGDNLALIYEYMANGDLRENMSG 670          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.288e-18
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  477 LEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLHG 761
            ++ AT  F   R +G GGFG VY G +++GT+VAVK     +Q G  EF  E+EMLS+  HR+LV LIG C E     L+YE + +G+V+SHL+G
Sbjct:  478 VKDATNNFDESRNIGVGGFGKVYKGELNDGTKVAVKRGNPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMENGTVKSHLYG 572          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: CRK4_ARATH (Cysteine-rich receptor-like protein kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.288e-18
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  462 FALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVE 746
            F    +E AT KF     LG+GGFG VY G+  +G +VAVK L++ +  G+REF  EV ++++L HRNLV+L+G C+E   R LVYE V + S++
Sbjct:  339 FDFKAIEAATNKFCETNKLGQGGFGEVYKGIFPSGVQVAVKRLSKTSGQGEREFANEVIVVAKLQHRNLVRLLGFCLERDERILVYEFVPNKSLD 433          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: CRI4_MAIZE (Putative receptor protein kinase CRINKLY4 OS=Zea mays GN=CR4 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.288e-18
Identity = 45/108 (41.67%), Postives = 69/108 (63.89%), Query Frame = 3
Query:  444 ILSVKTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNN--QNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLHG 761
            I   + F+  +LE+AT  FS    +G+G F CV+ G++ +GT VAVK   + +  +   +EF  E+++LSRL+H +L+ L+G C +G  R LVYE + HGS+  HLHG
Sbjct:  487 IRRAQEFSYEELEQATGGFSEDSQVGKGSFSCVFKGILRDGTVVAVKRAIKASDVKKSSKEFHNELDLLSRLNHAHLLNLLGYCEDGSERLLVYEFMAHGSLYQHLHG 594          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.288e-18
Identity = 47/112 (41.96%), Postives = 67/112 (59.82%), Query Frame = 3
Query:  450 SVKTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDN----------GTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHL 755
            ++K+F  ++L+ AT  F    +LGEGGFG V+ G +D           G  +AVK L ++   G +E++AEV  L +  H NLVKLIG C+E   R LVYE +  GS+E+HL
Sbjct:   53 NLKSFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHL 164          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: Y5188_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.082e-17
Identity = 44/93 (47.31%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  483 KATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLHG 761
            K T  F  +R+LG+GGFG VYHG +++ T+VAVK+L+ ++  G +EF AEVE+L R+HHRNLV L+G C +G    L+YE + +G ++ ++ G
Sbjct:  563 KMTNNF--ERVLGKGGFGTVYHGNLED-TQVAVKMLSHSSAQGYKEFKAEVELLLRVHHRNLVGLVGYCDDGDNLALIYEYMANGDLKENMSG 652          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: WAKLI_ARATH (Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.082e-17
Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  444 ILSVKTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLH 758
            + S K F+  +LEKAT+ F+  R+LG+GG G VY G++ +G  VAVK     +++   EFI EV +LS+++HRN+VKL+G C+E     LVYE + +G +   LH
Sbjct:  403 VQSSKIFSSKELEKATDNFNMNRVLGQGGQGTVYKGMLVDGRIVAVKRSKVLDEDKVEEFINEVGVLSQINHRNIVKLMGCCLETEVPILVYEHIPNGDLFKRLH 507          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: WAK5_ARATH (Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.082e-17
Identity = 42/105 (40.00%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  447 LSVKTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLHG 761
            + VK F    +++AT+ ++  RILG+GG G VY G++ + + VA+K     +++   +FI EV +LS+++HRN+VKL+G C+E     LVYE +  G++  HLHG
Sbjct:  391 VDVKIFTEEGMKEATDGYNESRILGQGGQGTVYKGILQDNSIVAIKKARLGDRSQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFISSGTLFDHLHG 495          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: LRKA3_ARATH (Lectin-domain containing receptor kinase A4.3 OS=Arabidopsis thaliana GN=LECRKA4.3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.082e-17
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  462 FALSDLEKATEKFSSKRILGEGGFGCVYHG-VMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLH 758
            F   DL KATE F   R++G GGFG VY G +  +  ++AVK +T N+  G REF+AE+E L RL H+NLV L G C       L+Y+ + +GS++S L+
Sbjct:  351 FRYRDLYKATEGFKENRVVGTGGFGIVYRGNIRSSSDQIAVKKITPNSMQGVREFVAEIESLGRLRHKNLVNLQGWCKHRNDLLLIYDYIPNGSLDSLLY 450          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNG-TEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHL 755
            + F++ +++ AT  F  K I+G GGFG VY G +D G T VAVK L   +  G +EF  E+EMLS+L H +LV LIG C E     LVYE + HG+++ HL
Sbjct:  504 RRFSIFEIKSATNDFEDKLIIGVGGFGSVYKGQIDGGATLVAVKRLEITSNQGAKEFETELEMLSKLRHVHLVSLIGYCDEDNEMVLVYEYMPHGTLKDHL 604          
The following BLAST results are available for this feature:
BLAST of FC873533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
Y1518_ARATH8.288e-1848.39Probable LRR receptor-like serine/threonine-protei... [more]
HERK_ARATH8.288e-1847.37Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
CRK4_ARATH8.288e-1846.32Cysteine-rich receptor-like protein kinase 4 OS=Ar... [more]
CRI4_MAIZE8.288e-1841.67Putative receptor protein kinase CRINKLY4 OS=Zea m... [more]
APK1B_ARATH8.288e-1841.96Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
Y5188_ARATH1.082e-1747.31Probable LRR receptor-like serine/threonine-protei... [more]
WAKLI_ARATH1.082e-1743.81Wall-associated receptor kinase-like 22 OS=Arabido... [more]
WAK5_ARATH1.082e-1740.00Wall-associated receptor kinase 5 OS=Arabidopsis t... [more]
LRKA3_ARATH1.082e-1745.00Lectin-domain containing receptor kinase A4.3 OS=A... [more]
Y5900_ARATH1.414e-1746.53Putative receptor-like protein kinase At5g39000 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CH08FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873533 ID=FC873533; Name=FC873533; organism=Citrus clementina; type=EST; length=766bp
TTGATAATACCACAGCAGTTCTGACATATGACAGACTGTGGCATAAGAAA
GTTCCTTTAAATTTGACTCTATTTGGTATTTATGAAGTCATTTATATCAG
CTATCCAGGTATTCCTTCTTCTCCGCCATATGAGAGTTCTACAGAGAGTG
GTCCAAGTGTTAGTGTTGGATCTCTCCCTTTCTCTGCAAACTTTGGAAAT
AAAAATCAGCGGATGAATTTCAGAACCATTGCTATCATTGCTTTGTCTGC
ATTTGTACTCTTACTGGTTTTTGTTGGAGCAATATCCATCCTTATAAAAT
GGAGGAAGGCTAGAAAACCATCAAGTGCTGTTGGCCCTGCCTTTGCATCA
TCTATAAACAAAAGATCCGGCATTGGGTCTATCTTATCTAGTAGTATTGC
TAGCTCAACCTCAGTGTCGCTCATGTCCACCATGGCTACTTGTATCCTCT
CTGTTAAAACATTTGCACTTTCTGATCTTGAGAAGGCAACAGAGAAATTC
AGTTCCAAGAGAATTTTGGGGGAAGGAGGTTTTGGGTGTGTTTACCATGG
TGTTATGGACAATGGAACTGAAGTTGCAGTGAAGCTGCTAACAAGAAATA
ATCAGAATGGGGACCGTGAATTTATTGCAGAAGTAGAGATGCTAAGCAGA
TTACATCATCGTAATCTCGTGAAATTGATCGGTATATGCATTGAAGGACG
CACGCGCTGCTTGGTGTATGAACTTGTTNCACATGGCAGTGTTGAGTCAC
ACCTGCATGGTGTTGA
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