FC873754

Overview
NameFC873754
Unique NameFC873754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length834
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.735e-51
Identity = 107/219 (48.86%), Postives = 152/219 (69.41%), Query Frame = 1
Query:    7 STYLLIFSIIAGV----LAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAG-LAKP-GVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST-----ADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            S + L+  +IA V    +A DP  LQD+CVAD +S V+VNGF CKD+ +++ DDFF A  L KP  +  +  GS VT  NV K+ GLNTLG+S++RIDY   G NPPHTHPRATE++ V+EG L VGF+++      +KL +KT+ KG+++VFP+ L+HFQ N + DKPA+ I A +SQ PG  +IA  +F + PP+ D+VL KAFQV  K ++ ++++
Sbjct:    4 SNFFLLIPLIALVTTQAMASDPSPLQDLCVADKNSPVRVNGFPCKDAKDVSVDDFFLAANLDKPMDITKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILSVIEGSLYVGFVTSNQANGENKLFTKTLNKGDVFVFPEGLIHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQAQ 222          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.593e-51
Identity = 107/197 (54.31%), Postives = 136/197 (69.04%), Query Frame = 1
Query:   46 LAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAG-LAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFI-STADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            +A DP  LQD CVAD  S V+VNGF CK+   + +DDFF A     P    N VGS VT  NV   PGLNTLG+SL+RIDY   G+NPPH HPRATE++ VLEG L VGF+ S  ++L SK V KG+ +VFPKA++HFQ N + +KPA   S+ NSQ PG  +IA+ +F + PP+ D+VLTKAFQV  K I+ +KS+
Sbjct:   22 IAFDPSPLQDFCVADMKSPVRVNGFPCKNPMEVNSDDFFNAAKFDMPRSTMNKVGSNVTNLNVLNFPGLNTLGISLARIDYAPLGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPAVAQSSLNSQNPGVITIASAVFGSKPPISDDVLTKAFQVEKKVIDWLKSQ 218          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.272e-50
Identity = 104/211 (49.29%), Postives = 143/211 (67.77%), Query Frame = 1
Query:   19 LIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFF-AGLAKP-GVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST-----ADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            LI  +    +A DP  LQD CVAD +S V+VNGF CKD+ ++  DDFF  A L KP     +  GS VT  NV K+ GLNTLG+S++RIDY   G NPPHTHPRATE++ V EG L VGF+++      +KL +KT+ KG+++VFP+ L+HFQ N + DKPA  I+A +SQ PG  +IA  +F + PP+ D+VL KAFQV  K ++ ++++
Sbjct:   12 LIALVATQAMAFDPSPLQDFCVADRNSPVRVNGFPCKDAKDVNVDDFFLEANLDKPMDTTKSKAGSNVTLINVMKLTGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVFEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQAQ 222          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL122_ORYSJ (Germin-like protein 12-2 OS=Oryza sativa subsp. japonica GN=Os12g0154800 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.243e-49
Identity = 107/219 (48.86%), Postives = 148/219 (67.58%), Query Frame = 1
Query:    7 STYLLIFSIIAGV----LAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAG-LAKP-GVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST-----ADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            S + L+ ++IA V    +A DP  LQD CVAD +S V VNGF CKD+ ++  DDFF A  L KP     +  GS VT  NV K+ GLNTLG+S++RIDY   G NPPHTHPRATE++ VLEG L VGF+++      +KL +KT+ KG+++VFP+ L+HFQ N + DKPA  I+A +SQ PG  +IA  +F +  P+ D+VL KAFQV  K ++ ++++
Sbjct:    4 SNFFLLTALIALVATQAMASDPSPLQDFCVADRNSPVHVNGFPCKDAKDVNVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVLEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNSPISDDVLAKAFQVDKKAVDWLQAQ 222          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.618e-49
Identity = 108/212 (50.94%), Postives = 140/212 (66.04%), Query Frame = 1
Query:    1 LFSTYLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            LF+  L + S  A  +A DP  LQD CVAD  S V VNGFAC D   +TAD FF A +       N VGS VT  NV +IPGLNTLG+S++RIDY   G NPPHTHPRATE++ VLEG L VGF+++   + L SK + KG+++VFP  L+HFQ N N  +PA  I+A +SQ PG  +IA  +F + PP+ D VL KAFQVG   I+ ++++
Sbjct:    8 LFAALLALVSWQA--IASDPSPLQDFCVADKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLHVGFVTSNPNNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGVITIANAVFGSKPPISDEVLAKAFQVGKGTIDWLQAQ 217          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL112_ARATH (Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana GN=At5g38960 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.618e-49
Identity = 104/210 (49.52%), Postives = 138/210 (65.71%), Query Frame = 1
Query:   13 YLLIFSIIAGVLAVDPDTLQDVCVA--DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNS-VGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            YLL  S +   +A DP  LQD C+     ++ + VNG  CKD   +TADDF+F+GL K     +S VGS VT  NV +IPGLNTLG+SL RIDY   G NPPHTHPRATE++ V EG L VGF S+   ++L +KT+ KG+++VFP+ L+HFQ N G +PA   ++ +SQ PG   I  TLF + PP+  NVL KAFQ+  K I +++ K
Sbjct:   12 YLLAASTLPFAIASDPSPLQDFCIGVNTPANALFVNGKFCKDPKLVTADDFYFSGLDKARTTESSPVGSNVTTVNVNQIPGLNTLGISLVRIDYGINGQNPPHTHPRATEILLVQEGTLFVGFFSSFPENRLFNKTLNKGDVFVFPEGLIHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLFGSKPPIDPNVLAKAFQLDPKVIIQLQKK 221          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 4.725e-49
Identity = 99/208 (47.60%), Postives = 137/208 (65.87%), Query Frame = 1
Query:   28 SIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFA-GLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST-----ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLA 633
            S++   LA DP  LQD CVAD  S V VNGF CK+   +TA+DFF    L  PG   N+ GS VT   V ++PGLNTLG+S +RID+   G NPPHTHPRATE++ VL+G L VGF+++      +   +K +  G+++VFP+ L+HFQ NNG  PA  I+A +SQ PG  +IA  +F +TPP+ D+VL KAF +   +++ I++K A
Sbjct:   20 SVLPRALASDPSQLQDFCVADKLSAVFVNGFVCKNPKQVTANDFFLPKALGVPGNTVNAQGSAVTPVTVNELPGLNTLGISFARIDFAPNGQNPPHTHPRATEILTVLQGTLLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVITIANAVFGSTPPILDDVLAKAFMIDKDQVDWIQAKFA 227          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL124_ORYSJ (Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica GN=Os12g0155000 PE=3 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 8.059e-49
Identity = 106/219 (48.40%), Postives = 147/219 (67.12%), Query Frame = 1
Query:    7 STYLLIFSIIAGV----LAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAG-LAKP-GVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST-----ADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            S + L+ + IA V    +A DP  LQD CVAD  S V+VNG  CKD+ +++ DDFF A  L KP     +  GS VT  NV K+ GLNTL +S++RIDY   G NPPHTHPRATE++ VLEG L VGF+++      +KL +KT+ KG+++VFP+ L+HFQ N + DKPA  I+A +SQ PG  +IA  +F + PP+ D+VL KAFQV  K ++ ++++
Sbjct:    4 SNFFLLTAFIALVATQAMASDPSPLQDFCVADKHSPVRVNGLPCKDAKDVSVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLSISMARIDYAPKGQNPPHTHPRATEILTVLEGSLYVGFVTSNQANRENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSHPPISDDVLAKAFQVDKKAMDWLQAQ 222          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.375e-48
Identity = 104/219 (47.49%), Postives = 138/219 (63.01%), Query Frame = 1
Query:    7 STYLLIFSIIAGVLA----VDPDTLQDVCVA------DTSSGV--KVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            S  LL+ S    VLA     DP+ +QD CVA      D ++       GF CK ++ + +DDFFFAGLA     +N  G  VTAAN E  PGLNTLGVS+ R+D   GG+NP H+HPRATE+I V+ G +  GF+STA +  SK + +GE +V P+ ++HFQ N G   A VI+AFNSQ+PG  +  +TLF + P +PD VL K+FQV  K I+ +KSK
Sbjct:    6 SAPLLVLSAALAVLASTCIADPEPVQDFCVAVVPRAGDAAAAACPAYPGFPCKPASTVVSDDFFFAGLAVASDTDNRFGFNVTAANAETFPGLNTLGVSIGRVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVSTAGEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGSDPEIPDAVLAKSFQVDAKIIKLLKSK 224          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.795e-48
Identity = 97/212 (45.75%), Postives = 139/212 (65.57%), Query Frame = 1
Query:    1 LFSTYLLIFSI-IAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLA 633
            LF ++LL+  + +   L+ D D LQD CV D  +   +NGF CK S  ++A DFFF+GL  P   +   G  V+ ANV   PGLNTLG+S++ +++  GG+NPPH+HPRATE   V+EG + VGF++T + L SK +  GE++V P+ LVHFQ N G   A +I++FNSQLPG+  + +TLF + P +P+ VLTK F+     + K+KSK A
Sbjct:   10 LFRSFLLVICVFVIPSLSSDSDPLQDFCVGDLKASPSINGFPCKSS--VSASDFFFSGLGGPLNTSTPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPNAVLTKTFRTDDVTVNKLKSKFA 219          
The following BLAST results are available for this feature:
BLAST of FC873754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL123_ORYSJ1.735e-5148.86Putative germin-like protein 12-3 OS=Oryza sativa ... [more]
GL84_ORYSJ6.593e-5154.31Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GL121_ORYSJ3.272e-5049.29Germin-like protein 12-1 OS=Oryza sativa subsp. ja... [more]
GL122_ORYSJ1.243e-4948.86Germin-like protein 12-2 OS=Oryza sativa subsp. ja... [more]
GL89_ORYSJ3.618e-4950.94Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]
GL112_ARATH3.618e-4949.52Putative germin-like protein subfamily 1 member 12... [more]
GL41_ORYSJ4.725e-4947.60Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]
GL124_ORYSJ8.059e-4948.40Putative germin-like protein 12-4 OS=Oryza sativa ... [more]
GL38_ORYSJ1.375e-4847.49Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GLT2_ARATH1.795e-4845.75Germin-like protein subfamily T member 2 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AC03FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873754 ID=FC873754; Name=FC873754; organism=Citrus clementina; type=EST; length=834bp
CTTTTCAGCACATACTTGCTTATTTTCAGCATCATAGCTGGAGTCCTTGC
AGTCGATCCTGACACGCTCCAGGATGTTTGTGTGGCCGACACCTCTTCAG
GAGTCAAGGTGAACGGCTTTGCATGCAAAGATAGCGCAAATATTACAGCA
GATGATTTCTTCTTTGCTGGCCTAGCCAAGCCAGGAGTAGTTAACAATTC
AGTGGGATCGCTTGTAACGGCCGCCAATGTTGAAAAAATTCCAGGCCTCA
ACACACTAGGCGTGTCCCTGTCCCGCATCGACTACGAAGCCGGTGGCCTG
AACCCACCTCACACTCACCCACGTGCCACCGAAATGATCTTTGTGCTCGA
AGGTGAATTGGATGTAGGATTCATCAGCACCGCCGATAAATTGATCTCAA
AAACTGTCAAGAAAGGCGAAATCTATGTGTTCCCCAAAGCTTTGGTTCAT
TTTCAGAAGAATAATGGCGACAAGCCGGCTTCAGTTATTTCTGCTTTCAA
CAGTCAATTGCCTGGAACTCAATCCATTGCTGCCACTTTGTTTACTGCCA
CACCTCCCGTGCCGGACAATGTTTTGACAAAAGCTTTTCAAGTTGGAACC
AAAGAGATTGAGAAAATTAAGTCCAAGCTTGCACCAAAGAAAACCTGAAG
ACGGGTTTGCGATTACAGGAGAAATGATCATCCGCTTCTTTCTTTTCTTT
CGAGTTTTGAAGAAAGATTCCGGTTCGGATTTGATATATATATATATATA
TATATACATATGGAGTCAATGAAATTGAATATGCATTTGTAATGATCTTT
TATGTTATGCTCCTACTTCATAGTTCATATGAAA
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