FC875266
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13 Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 1 Query: 463 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 615 K LEC++CL+E + RL+PKC+H FH ECID W +SH+TCP+CR+ + Sbjct: 122 KDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1M_ARATH (RING-H2 finger protein ATL1M OS=Arabidopsis thaliana GN=ATL1M PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13 Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 1 Query: 463 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 621 K LECAVCL++ D + R++P+C+H FH +CID W +SH+TCP+CR+ + S Sbjct: 115 KDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGS 167
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1E_ARATH (RING-H2 finger protein ATL1E OS=Arabidopsis thaliana GN=ATL1E PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 8.347e-13 Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN 612 LD+ I+++ + + L G + C +CL+E+ ET+R +P+CDH FH +CID WL+ H++CPVCR++ Sbjct: 226 LDQSTIESYKKVELGESRRLP-GTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRNS 297
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.090e-12 Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = 1 Query: 394 LDREVIDTFPTFVY-SDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 666 L ++ + P +Y S + +K A EC +CL +FED E +R++PKC+H FH CID WL S ++CP CR +L E QPS + S Sbjct: 89 LKKQALKQIPVGLYGSGIIDMK----ATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLE------QPSPMAVS 170
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL5A_ARATH (RING-H2 finger protein ATL5A OS=Arabidopsis thaliana GN=ATL5A PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.424e-12 Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 615 L + + FP Y + V A ECA+CL EF D E +R++P C+H FH CID WL SH++CP CR +L Sbjct: 80 LKKRELKKFPVAEYGSGE---VKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSL 150
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL2I_ARATH (RING-H2 finger protein ATL2I OS=Arabidopsis thaliana GN=ATL2I PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.860e-12 Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN-----LASEPGETTPQPSELGSSEV 672 LD + I ++P +YS+ K A CA+CL +++ LR +P C+H+FH +CID WL + TCPVCR++ L++ E P S + ++ + Sbjct: 122 LDEDTIQSYPKILYSEAKGPTT---ASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVAATRM 216
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1K_ARATH (RING-H2 finger protein ATL1K OS=Arabidopsis thaliana GN=ATL1K PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12 Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA----------SEPGETTPQPSEL 657 + ++ + FP YS L G EC +CL++F E LRL+PKC+H FH CID WL+ H TCP CR+ L S+ T +P+E+ Sbjct: 109 IKKKALRMFPVVSYSPEMNLP-GLDE-ECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDFSQADSVTAEPTEI 204
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL2M_ARATH (RING-H2 finger protein ATL2M OS=Arabidopsis thaliana GN=ATL2M PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12 Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKV-----GKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 636 LD+ VI+++P F +S + G G C++CL E+++ E LR++P+C H FH C+DAWL+ + +CPVCR++ P T Sbjct: 105 LDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTST 190
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1J_ARATH (RING-H2 finger protein ATL1J OS=Arabidopsis thaliana GN=ATL1J PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12 Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 606 + ++ + FP YS L G G EC +CL++F E LRL+PKC+H FH CID WL+ H TCP CR Sbjct: 109 IKKKALRMFPVVSYSREMNLP-GIGE-ECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCR 177
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.411e-12 Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 606 ++++ + FP YS L G G EC +CL++F E +R++PKC H FH CID WL+ H TCP CR Sbjct: 110 INKKALRMFPVVSYSPEMNLP-GLGE-ECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCR 178 The following BLAST results are available for this feature:
BLAST of FC875266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875266 ID=FC875266; Name=FC875266; organism=Citrus clementina; type=EST; length=673bpback to top |