FC875266
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL5J_ARATH (RING-H2 finger protein ATL5J OS=Arabidopsis thaliana GN=ATL5J PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12 Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1 Query: 445 KTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 618 + L V + ECAVCL + E ++ RL+P C+H FH C D WL +HT CPVCR+ LA Sbjct: 93 RELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRAELA 150
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12 Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1 Query: 400 REVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL--ASEPGETTPQPSELGSSE 669 R+ + +F T YS L + ECA+CL+EF +E ++L+P C H FH CID WL SH++CP CR L E Q S L S++ Sbjct: 107 RKALKSFQTVSYST--ELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQ 196
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL5D_ARATH (Putative RING-H2 finger protein ATL5D OS=Arabidopsis thaliana GN=ATL5D PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11 Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTL----KVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 636 L EVI FP Y + + K C++CL +++ + +R++P C+H+FH C+D WL H TCPVCR++ P T Sbjct: 97 LTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMT 181
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11 Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 1 Query: 397 DREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 642 D E I PT ++ VG G LEC VC ++ E++R +P C+H+FH +CI WLE H TCPVCR +L+ + T P Sbjct: 204 DTEKIQALPTIQITEEH---VGSG-LECPVCKEDYTVGESVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 280
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1R_ARATH (RING-H2 finger protein ATL1R OS=Arabidopsis thaliana GN=ATL1R PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11 Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 615 L ++V+ + P YS + +ECA+CL EF + LR++P+C H FH CID WL SH++CP CR L Sbjct: 78 LKKKVLRSLPKLTYSPDSP--PAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQIL 149
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11 Identity = 38/90 (42.22%), Postives = 49/90 (54.44%), Query Frame = 1 Query: 397 DREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 666 D+E I + PT V +V G LEC VC ++ +E +R +P C+H FH CI WLE H TCPVCR +L E Q SE +S Sbjct: 206 DKEKITSLPTVT---VTQEQVNTG-LECPVCKEDYTVEEKVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQTQSSEASAS 290
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11 Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1 Query: 397 DREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 642 D E I PT ++ VG G LEC VC ++ E +R +P C+H+FH +CI WLE H TCPVCR +L+ + T P Sbjct: 205 DNEKIQALPTIQITEEH---VGSG-LECPVCKEDYTVGECVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 281
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11 Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 1 Query: 397 DREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 642 D+E I PT ++ VG G LEC VC ++ E++R +P C+H+FH CI WLE H +CPVCR +L + T P Sbjct: 208 DKEKIQALPTVPVTEEH---VGSG-LECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 284
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11 Identity = 37/90 (41.11%), Postives = 49/90 (54.44%), Query Frame = 1 Query: 397 DREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 666 D+E I + PT V +V G LEC VC ++ +E +R +P C+H FH CI WLE H TCPVCR +L E Q +E +S Sbjct: 205 DKEKITSLPTVT---VTQEQVDMG-LECPVCKEDYTVEEEVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQSTEASAS 289
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL5O_ARATH (RING-H2 finger protein ATL5O OS=Arabidopsis thaliana GN=ATL5O PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11 Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRS 609 LD VI + P FVY + + + + EC +CL +E + R + C H FH ECID WL SH+TCP+CRS Sbjct: 112 LDSSVISSIPLFVYEENEEEEDEEE--ECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRS 181 The following BLAST results are available for this feature:
BLAST of FC875266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875266 ID=FC875266; Name=FC875266; organism=Citrus clementina; type=EST; length=673bpback to top |