FC875276

Overview
NameFC875276
Unique NameFC875276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875276_ssr27 microsatellite FC875276_ssr27:27..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig676 contig Ccv1_Contig676:20..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_MOUSE (60S ribosomal protein L15 OS=Mus musculus GN=Rpl15 PE=2 SV=4)

HSP 1 Score: 248.054 bits (632), Expect = 3.375e-65
Identity = 123/195 (63.08%), Postives = 138/195 (70.77%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRR 194          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_MACFA (60S ribosomal protein L15 OS=Macaca fascicularis GN=RPL15 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.375e-65
Identity = 123/195 (63.08%), Postives = 138/195 (70.77%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRR 194          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_HUMAN (60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 3.375e-65
Identity = 123/195 (63.08%), Postives = 138/195 (70.77%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRR 194          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_BOVIN (60S ribosomal protein L15 OS=Bos taurus GN=RPL15 PE=2 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 3.375e-65
Identity = 123/195 (63.08%), Postives = 138/195 (70.77%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRR 194          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_ASPNG (60S ribosomal protein L15 OS=Aspergillus niger GN=rpl15 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.086e-63
Identity = 119/194 (61.34%), Postives = 137/194 (70.62%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 636
            MGA  +V E+ +KKQSDV+RFL RVRCWE RQ  +I R +RP+RPDKARRLGYKAKQ                       YGKPTN G+ QLK+QR+ R+ AEER GR+   LRVLNSYWIN+DSTYKYFEVILVDP H AIR D RINW+CN VHKHRE RGLT+ GKK RG+  KGH ++  R  RR TWKR
Sbjct:    1 MGALKYVEEIQKKKQSDVIRFLLRVRCWELRQLNAIHRASRPSRPDKARRLGYKAKQGYVVYRIRVRRGGRKRPAPKGATYGKPTNMGINQLKYQRALRATAEERVGRRCANLRVLNSYWINQDSTYKYFEVILVDPQHKAIRRDARINWICNAVHKHREARGLTATGKKSRGI-NKGHRYNNTRSGRRHTWKR 193          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_MYLPI (60S ribosomal protein L15 OS=Mylopharyngodon piceus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 241.891 bits (616), Expect = 2.419e-63
Identity = 123/195 (63.08%), Postives = 136/195 (69.74%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGLRVLNSYW+ EDSTYK+FEVIL+D  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKR 194          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_CTEID (60S ribosomal protein L15 OS=Ctenopharyngodon idella GN=rpl15 PE=2 SV=3)

HSP 1 Score: 241.891 bits (616), Expect = 2.419e-63
Identity = 123/195 (63.08%), Postives = 136/195 (69.74%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGLRVLNSYW+ EDSTYK+FEVIL+D  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKR 194          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_MONAL (60S ribosomal protein L15 OS=Monopterus albus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 3.159e-63
Identity = 122/195 (62.56%), Postives = 136/195 (69.74%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR
Sbjct:    1 MGAYRYMQELWRKKQSDVMRFLLRVRCWQYRQLSNLHRAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKR 194          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_CYPCA (60S ribosomal protein L15 OS=Cyprinus carpio GN=rpl15 PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 7.038e-63
Identity = 121/195 (62.05%), Postives = 136/195 (69.74%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGLRVL+SYW+ EDSTYK+FEV+L+D  H AIR DP   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLSSYWVGEDSTYKFFEVVLIDTFHKAIRRDPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKR 194          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_ICTPU (60S ribosomal protein L15 OS=Ictalurus punctatus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 9.191e-63
Identity = 122/195 (62.56%), Postives = 136/195 (69.74%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  GGLRVLNSYW+ EDSTYK+FEVIL+D  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAPWRR 194          
The following BLAST results are available for this feature:
BLAST of FC875276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_MOUSE3.375e-6563.0860S ribosomal protein L15 OS=Mus musculus GN=Rpl15... [more]
RL15_MACFA3.375e-6563.0860S ribosomal protein L15 OS=Macaca fascicularis G... [more]
RL15_HUMAN3.375e-6563.0860S ribosomal protein L15 OS=Homo sapiens GN=RPL15... [more]
RL15_BOVIN3.375e-6563.0860S ribosomal protein L15 OS=Bos taurus GN=RPL15 P... [more]
RL15_ASPNG1.086e-6361.3460S ribosomal protein L15 OS=Aspergillus niger GN=... [more]
RL15_MYLPI2.419e-6363.0860S ribosomal protein L15 OS=Mylopharyngodon piceu... [more]
RL15_CTEID2.419e-6363.0860S ribosomal protein L15 OS=Ctenopharyngodon idel... [more]
RL15_MONAL3.159e-6362.5660S ribosomal protein L15 OS=Monopterus albus GN=r... [more]
RL15_CYPCA7.038e-6362.0560S ribosomal protein L15 OS=Cyprinus carpio GN=rp... [more]
RL15_ICTPU9.191e-6362.5660S ribosomal protein L15 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionC31402B08EF CTVClemen1 Citrus clementina cDNA clone C31402B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875276 ID=FC875276; Name=FC875276; organism=Citrus clementina; type=EST; length=689bp
GAAAACCTAGTCGCACAGATACTGCGCAGCTCAGCTCAGCTCAGCTCAGA
GCCAATGGGGGCTTACACGTTCGTGTCGGAGCTATGGAGGAAGAAGCAGT
CAGATGTGATGAGGTTCTTGCAGAGGGTGAGGTGTTGGGAGTACCGCCAA
CATCCATCTATTGTTAGGGTCACCCGTCCCACTCGACCTGACAAGGCTCG
ACGCTTGGGTTACAAGGCCAAGCAGGGTTATGTTGTTTATCGTGTGCGGG
TAAGGCGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTGTATGGT
AAACCCACAAACCAGGGTGTTACTCAACTGAAGTTTCAGCGCAGCAAGAG
GTCTGTTGCAGAGGAGCGTGCCGGTCGTAAGTTGGGAGGTCTTAGGGTTC
TCAATTCTTACTGGATCAATGAGGACTCCACTTATAAGTACTTTGAGGTG
ATCTTGGTTGATCCTGCTCATAATGCCATCCGAAATGACCCAAGAATTAA
TTGGTTATGCAATCCTGTCCATAAGCACAGGGAACTCCGTGGTCTTACTT
CTGCAGGTAAGAAGTACAGAGGCCTACGTGGAAAAGGACACTTGCACCAC
AAGGCTCGGCCTTCGCGCAGGGCTACCTGGAAGAGAAACATACTCTTTCC
CTCCGTCGCTACCGTTGATCATTGTTATGGTTTTGATGT
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