FC875276
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_PYRAE (50S ribosomal protein L15e OS=Pyrobaculum aerophilum GN=rpl15e PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21 Identity = 66/169 (39.05%), Postives = 90/169 (53.25%), Query Frame = 1 Query: 61 AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLC-NPVHKHRELRGLTSAGKK 564 AY++++ +RK +V L R E+R+ P+IVRV RP R ++AR+LGYKAKQ +P GV + +S R VAEERA RK L VLNSYW+ +D Y+YFEVIL+D I+NDP + +C V + R +R L KK Sbjct: 5 AYSYMAMWYRKIGREVHERLMRKILIEWRKAPAIVRVERPFRLERARKLGYKAKQGVVVVRVRLMRGPFNRRRPDS--GRRPKRMGVYGITAWKSWRQVAEERAARKHPNLEVLNSYWVADDGIYRYFEVILIDCNLPTIKNDPLYSGICGREVPRRRIIRRLRERQKK 171
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_BRANA (60S ribosomal protein L15 (Fragment) OS=Brassica napus GN=RPL15 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.110e-19 Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1 Query: 109 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225 MRF+QRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ Sbjct: 3 MRFVQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 41 HSP 2 Score: 36.5798 bits (83), Expect = 4.110e-19 Identity = 19/29 (65.52%), Postives = 20/29 (68.97%), Query Frame = 2 Query: 281 PRALCMVNPQTRVLLN*SFSAARGLLQRS 367 P+ LCMVNPQTR LLN S A LL RS Sbjct: 60 PKVLCMVNPQTRELLNSSSRGATVLLLRS 88
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_BRUPA (60S ribosomal protein L15 (Fragment) OS=Brugia pahangi PE=3 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16 Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 1 Query: 55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225 MGAY ++ ELWRKK+S+ MR+L R+RCW+YRQ +I RV+RPTRP+KARRLGY + + Sbjct: 1 MGAYRYMQELWRKKKSETMRYLLRIRCWQYRQLTAIHRVSRPTRPEKARRLGYLSNE 57 The following BLAST results are available for this feature:
BLAST of FC875276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 93
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875276 ID=FC875276; Name=FC875276; organism=Citrus clementina; type=EST; length=689bpback to top |