FC875287

Overview
NameFC875287
Unique NameFC875287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12426 contig Ccv1_Contig12426:449..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875287 vs. ExPASy Swiss-Prot
Match: NAT9_ARATH (Putative nucleobase-ascorbate transporter 9 OS=Arabidopsis thaliana GN=NAT9 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.003e-37
Identity = 88/226 (38.94%), Postives = 119/226 (52.65%), Query Frame = 2
Query:    5 FGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFXXXXXXXXXXXXXGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIF-----DRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARY 667
            FGTRLP +   SY ++    SII + RF+ Y+ DP E+F RTMR+IQG+LI+    Q+++ F G+WRN+ RF             G GLY  GFP                         ++K+G  I+     DR+ ++  + +VW++A LLT  G Y+     TQ SCRTDR GLI   P            P+FD  ++FAMM ASFV L ESTG F+A ARY
Sbjct:  109 FGTRLPVIASASYAYIIPITSIIYSTRFTYYT-DPFERFVRTMRSIQGALIITGCFQVLVCFLGVWRNIVRFLSPLSIAPLVTFTGLGLYHIGFP-------------------------LVKKGPMIWDGNRCDRYGMMLCIPVVWLFAQLLTSSGVYDHKPQTTQTSCRTDRTGLITNTP-----------CPTFDITDSFAMMAASFVTLFESTGLFYASARY 297          
BLAST of FC875287 vs. ExPASy Swiss-Prot
Match: NAT11_ARATH (Nucleobase-ascorbate transporter 11 OS=Arabidopsis thaliana GN=NAT11 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.738e-37
Identity = 84/242 (34.71%), Postives = 124/242 (51.24%), Query Frame = 2
Query:    5 FGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFXXXXXXXXXXXXXGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYN---------------DAAPK---TQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASA 676
            FGTRLP V G S+ ++   + +I +  F N +     KF+ TMR +QG++IV S  Q +LGFSGL   + RF             G   + +GFP    CVEI +P +++++  + YL  V   G  +F  +AV  S +++W YA  LTVGGAY+               D   K   T   CRTD +     A W+R+P+PFQWG P+F    +  M+  S VA V+S G + + +   +A
Sbjct:  242 FGTRLPLVQGSSFVYLAPVLVVINSEEFRNLTE---HKFRDTMRELQGAIIVGSLFQCILGFSGLMSLLLRFINPVVVAPTVAAVGLAFFSYGFPQAGTCVEISVPLILLLLIFTLYLRGVSLFGHRLFRIYAVPLSALLIWTYAFFLTVGGAYDYRGCNADIPSSNILIDECKKHVYTMKHCRTDASNAWRTASWVRIPYPFQWGFPNFHMRTSIIMIFVSLVASVDSVGTYHSASMIVNA 480          
BLAST of FC875287 vs. ExPASy Swiss-Prot
Match: NAT12_ARATH (Nucleobase-ascorbate transporter 12 OS=Arabidopsis thaliana GN=NAT12 PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 8.178e-35
Identity = 82/244 (33.61%), Postives = 122/244 (50.00%), Query Frame = 2
Query:    5 FGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFXXXXXXXXXXXXXGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGA--YNDAAPKTQAS----------------CRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATP 682
            FG+RLP + G S+ F+   ++II +  F   +G+    FK  MR +QG++I+ S  Q VLG+SGL   + R              G   Y +GFP V KC+EIG+ Q+++++  + YL  +      IF  +AV  S+ I W  A LLT  GA  Y    P    S                CR D +  + +APW R P+P QWG P F+   AF M + S +A V+S G++ A +   ++ P
Sbjct:  236 FGSRLPLIQGPSFVFLAPALAIINSPEFQGLNGN--NNFKHIMRELQGAIIIGSAFQAVLGYSGLMSLILRLVNPVVVAPTVAAVGLSFYSYGFPLVGKCLEIGVVQILLVIIFALYLRKISVLSHRIFLIYAVPLSLAITWAAAFLLTETGAYTYKGCDPNVPVSNVVSTHCRKYMTRMKYCRVDTSHALSSAPWFRFPYPLQWGVPLFNWKMAFVMCVVSVIASVDSVGSYHASSLLVASRP 477          
BLAST of FC875287 vs. ExPASy Swiss-Prot
Match: S23A2_XENTR (Solute carrier family 23 member 2 OS=Xenopus tropicalis GN=slc23a2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.705e-20
Identity = 63/251 (25.10%), Postives = 114/251 (45.42%), Query Frame = 2
Query:    5 FGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGD-----------PVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFXXXXXXXXXXXXXGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQY-----LPHVIKRGKN--------IFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTD-RAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATP 682
            FG RLP     ++ F+    +I+   ++   + D               +   +R IQG++I++S +++V+GF GL   + ++             G   ++       K   I +  + +++  SQY     LP  I + K         +F  F +I ++++ W+   + TV   +   + K     RTD R G++  APW +VP+PFQWG P+  A     M+ A   +++ES G ++A AR + A P
Sbjct:  157 FGCRLPLFQASAFAFLAPARAILSLEKWKCNTTDLSITNGTELLHTEHIWYPRIREIQGAIIMSSLIEVVIGFLGLPGALLKYIGPLTITPTVSLIGLSGFQAAGERAGKHWGIAMLTIFLVLLFSQYARNVKLPLPIYKSKKGWTAYKLQLFKMFPIIMAILVSWLLCFIFTVTDVFPPDSSKYGYYARTDARQGVLTVAPWFKVPYPFQWGLPTVSAAGVIGMLSAVVASIIESIGDYYACARLSCAPP 407          
BLAST of FC875287 vs. ExPASy Swiss-Prot
Match: S23A2_RAT (Solute carrier family 23 member 2 OS=Rattus norvegicus GN=Slc23a2 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 61/250 (24.40%), Postives = 116/250 (46.40%), Query Frame = 2
Query:    5 FGTRLPAVMGGSYTFVPSTISIILAGRF---------SNYSGDPVEK-FKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFXXXXXXXXXXXXXGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHV--------IKRG-----KNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTD-RAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATP 682
            FG RLP     ++ F+    +I+   ++         +N + + +E  +   ++ IQG++I++S +++V+G  GL   + R+             G   ++       K   I +  + +++  SQY  +V         K+G       +F  F +I ++++ W+   + TV   +   +       RTD R G++  APW +VP+PFQWG P+  A     M+ A   +++ES G ++A AR + A P
Sbjct:  157 FGCRLPLFQASAFAFLAPARAILSLDKWKCNTTEITVANGTAELLEHIWHPRIQEIQGAIIMSSLIEVVIGLLGLPGALLRYIGPLTITPTVALIGLSGFQAAGERAGKHWGIAMLTIFLVLLFSQYARNVKFPLPIYKSKKGWTAYKLQLFKMFPIILAILVSWLLCFIFTVTDVFPSNSTDYGYYARTDARKGVLLVAPWFKVPYPFQWGMPTVSAAGVIGMLSAVVASIIESIGDYYACARLSCAPP 406          
BLAST of FC875287 vs. ExPASy Swiss-Prot
Match: S23A2_MOUSE (Solute carrier family 23 member 2 OS=Mus musculus GN=Slc23a2 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 61/250 (24.40%), Postives = 116/250 (46.40%), Query Frame = 2
Query:    5 FGTRLPAVMGGSYTFVPSTISIILAGRF---------SNYSGDPVEK-FKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFXXXXXXXXXXXXXGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHV-----IKRGKN--------IFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTD-RAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATP 682
            FG RLP     ++ F+    +I+   ++         +N + + +E  +   ++ IQG++I++S +++V+G  GL   + R+             G   ++       K   I +  + +++  SQY  +V     I + K         +F  F +I ++++ W+   + TV   +   +       RTD R G++  APW +VP+PFQWG P+  A     M+ A   +++ES G ++A AR + A P
Sbjct:  158 FGCRLPLFQASAFAFLAPARAILSLDKWKCNTTEITVANGTAELLEHIWHPRIQEIQGAIIMSSLIEVVIGLLGLPGALLRYIGPLTITPTVALIGLSGFQAAGERAGKHWGIAMLTIFLVLLFSQYARNVKFPLPIYKSKKGWTAYKFQLFKMFPIILAILVSWLLCFIFTVTDVFPSNSTDYGYYARTDARKGVLLVAPWFKVPYPFQWGMPTVSAAGVIGMLSAVVASIIESIGDYYACARLSCAPP 407          
BLAST of FC875287 vs. ExPASy Swiss-Prot
Match: S23A2_HUMAN (Solute carrier family 23 member 2 OS=Homo sapiens GN=SLC23A2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 62/252 (24.60%), Postives = 114/252 (45.24%), Query Frame = 2
Query:    5 FGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDP-----VEKFKRT-------MRAIQGSLIVASTLQIVLGFSGLWRNVTRFXXXXXXXXXXXXXGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHV--------IKRG-----KNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTD-RAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATP 682
            FG RLP     ++ F+    +I+   ++   + D        +   T       +R IQG++I++S +++V+G  GL   + ++             G   ++       K   I +  + +++  SQY  +V         K+G       +F  F +I ++++ W+   + TV   +   + K     RTD R G++  APW +VP+PFQWG P+  A     M+ A   +++ES G ++A AR + A P
Sbjct:  158 FGCRLPLFQASAFAFLAPARAILSLDKWKCNTTDVSVANGTAELLHTEHIWYPRIREIQGAIIMSSLIEVVIGLLGLPGALLKYIGPLTITPTVALIGLSGFQAAGERAGKHWGIAMLTIFLVLLFSQYARNVKFPLPIYKSKKGWTAYKLQLFKMFPIILAILVSWLLCFIFTVTDVFPPDSTKYGFYARTDARQGVLLVAPWFKVPYPFQWGLPTVSAAGVIGMLSAVVASIIESIGDYYACARLSCAPP 409          
BLAST of FC875287 vs. ExPASy Swiss-Prot
Match: S23A1_HUMAN (Solute carrier family 23 member 1 OS=Homo sapiens GN=SLC23A1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 64/250 (25.60%), Postives = 111/250 (44.40%), Query Frame = 2
Query:    8 GTRLPAVMGGSYTFVPSTISIILAGR---------FSNYSG--DPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFXXXXXXXXXXXXXGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPH------VIKRGKN-------IFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDA-APWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATP 682
            G RLP     ++ F+    +I+   R         + N+S   +    +   +R +QG+++V+S +++V+G  GL   +  +             G  +++           I    +++I+  SQYL +      V + GK        IF  F ++ +++ VW+  ++LT+               RTD  G I A APWIR+P+P QWG P+  A     M  A+   ++ES G ++A AR A A P
Sbjct:  101 GIRLPLFQASAFAFLVPAKAILALERWKCPPEEEIYGNWSLPLNTSHIWHPRIREVQGAIMVSSVVEVVIGLLGLPGALLNYIGPLTVTPTVSLIGLSVFQAAGDRAGSHWGISACSILLIILFSQYLRNLTFLLPVYRWGKGLTLLRIQIFKMFPIMLAIMTVWLLCYVLTLTDVLPTDPKAYGFQARTDARGDIMAIAPWIRIPYPCQWGLPTVTAAAVLGMFSATLAGIIESIGDYYACARLAGAPP 350          
BLAST of FC875287 vs. ExPASy Swiss-Prot
Match: S23A1_MOUSE (Solute carrier family 23 member 1 OS=Mus musculus GN=Slc23a1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 63/250 (25.20%), Postives = 109/250 (43.60%), Query Frame = 2
Query:    8 GTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPV-----------EKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFXXXXXXXXXXXXXGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPH------VIKRGKN-------IFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDA-APWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATP 682
            G RLP     ++ F+    SI+   R+   S + +             +   +R +QG+++V+S +++V+G  GL   +  +             G  +++           I    +++IV  SQYL +      V + GK        IF  F ++ +++ VW+  ++LT+               RTD  G I A +PWIR+P+P QWG P+        M  A+   ++ES G ++A AR A A P
Sbjct:  108 GIRLPLFQASAFAFLVPAKSILALERWKCPSEEEIYGNWSMPLNTSHIWHPRIREVQGAIMVSSMVEVVIGLMGLPGALLSYIGPLTVTPTVSLIGLSVFQAAGDRAGSHWGISACSILLIVLFSQYLRNLTFLLPVYRWGKGLTLFRVQIFKMFPIVLAIMTVWLLCYVLTLTDVLPADPTVYGFQARTDARGDIMAISPWIRIPYPCQWGLPTVTVAAVLGMFSATLAGIIESIGDYYACARLAGAPP 357          
BLAST of FC875287 vs. ExPASy Swiss-Prot
Match: S23A1_RAT (Solute carrier family 23 member 1 OS=Rattus norvegicus GN=Slc23a1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 63/250 (25.20%), Postives = 110/250 (44.00%), Query Frame = 2
Query:    8 GTRLPAVMGGSYTFVPSTISIILAGR---------FSNYSG--DPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFXXXXXXXXXXXXXGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPH------VIKRGKN-------IFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDA-APWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATP 682
            G RLP     ++ F+    +I+   R         + N+S   +    +   +R +QG+++V+S +++V+G  GL   +  +             G  +++           I    +++IV  SQYL +      V + GK        IF  F ++ +++ VW+  ++LT+               RTD  G I A +PWIR+P+P QWG P+        M  A+   ++ES G ++A AR A A P
Sbjct:  108 GIRLPLFQASAFAFLVPAKAILALERWKCPPEEEIYGNWSMPLNTSHIWHPRIREVQGAIMVSSVVEVVIGLLGLPGALLSYIGPLTVTPTVSLIGLSVFQAAGDRAGSHWGISACSILLIVLFSQYLRNLTFLLPVYRWGKGLTLFRIQIFKMFPIVLAIMTVWLLCYVLTLTDVLPADPTVYGFQARTDARGDIMAISPWIRIPYPCQWGLPTVTVAAVLGMFSATLAGIIESIGDYYACARLAGAPP 357          
The following BLAST results are available for this feature:
BLAST of FC875287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
NAT9_ARATH3.003e-3738.94Putative nucleobase-ascorbate transporter 9 OS=Ara... [more]
NAT11_ARATH8.738e-3734.71Nucleobase-ascorbate transporter 11 OS=Arabidopsis... [more]
NAT12_ARATH8.178e-3533.61Nucleobase-ascorbate transporter 12 OS=Arabidopsis... [more]
S23A2_XENTR9.705e-2025.10Solute carrier family 23 member 2 OS=Xenopus tropi... [more]
S23A2_RAT2.391e-1824.40Solute carrier family 23 member 2 OS=Rattus norveg... [more]
S23A2_MOUSE2.391e-1824.40Solute carrier family 23 member 2 OS=Mus musculus ... [more]
S23A2_HUMAN3.122e-1824.60Solute carrier family 23 member 2 OS=Homo sapiens ... [more]
S23A1_HUMAN9.084e-1825.60Solute carrier family 23 member 1 OS=Homo sapiens ... [more]
S23A1_MOUSE1.186e-1725.20Solute carrier family 23 member 1 OS=Mus musculus ... [more]
S23A1_RAT4.508e-1725.20Solute carrier family 23 member 1 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC31402C07EF CTVClemen1 Citrus clementina cDNA clone C31402C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875287 ID=FC875287; Name=FC875287; organism=Citrus clementina; type=EST; length=693bp
ATTGTTTGGGACTCGATTACCTGCAGTTATGGGAGGGTCTTACACTTTTG
TCCCTTCTACAATTTCAATCATCCTTGCTGGTCGATTCAGTAATTATTCT
GGAGATCCTGTTGAGAAATTCAAGAGAACTATGCGGGCAATACAGGGTTC
TCTCATTGTTGCTTCTACTCTTCAGATTGTCCTAGGCTTCAGTGGGCTTT
GGCGTAATGTTACAAGGTTTTTAAGTCCACTCTCAGTGGTTCCTTTGATT
TCCCTAGTTGGTTTTGGGCTGTACGAGTTTGGTTTTCCTGGGGTTGCCAA
ATGTGTGGAGATTGGACTGCCTCAACTCGTCATTATAGTATTTATTTCAC
AGTATCTGCCTCATGTGATAAAACGTGGGAAAAATATCTTTGATCGTTTT
GCTGTCATATTTTCTGTGGTGATTGTGTGGATATATGCTCATCTACTTAC
TGTGGGTGGGGCTTATAATGACGCTGCCCCTAAGACACAAGCAAGCTGCC
GAACTGATCGTGCTGGTCTCATTGATGCTGCTCCCTGGATAAGAGTTCCA
TGGCCCTTCCAATGGGGGGCGCCTTCATTTGATGCTGGTGAAGCTTTTGC
CATGATGATGGCCTCCTTTGTTGCTCTTGTTGAGTCAACTGGTGCTTTTT
TTGCGGTAGCACGGTATGCAAGTGCAACTCCNAATGCACCTTC
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