FC875289

Overview
NameFC875289
Unique NameFC875289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:5..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.388e-53
Identity = 104/201 (51.74%), Postives = 126/201 (62.69%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTD---GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWN 699
            CGSG  C  +  G G     GG+LG  IS  MF+ +L +RN+  C  + FY+Y+AFI AA++FP FG SG+   R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                  TDPV+SFK+A+WFWMT Q PKPSCH+VI   WN
Sbjct:   57 CGSGN-CQSQCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWN 254          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.812e-53
Identity = 105/189 (55.56%), Postives = 126/189 (66.67%), Query Frame = 1
Query:  151 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWN 699
            +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FPAF  +G++  R REIAAF AQT HETTG  GW  AP G YAWGYC+  E++PPS YC  + NYPC  GK Y+GRGP+QL+WNYNY +C                 ++DP +SFKSA WFWMT Q PKPSCH VI   W+
Sbjct:   43 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQC--GRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWS 228          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.812e-53
Identity = 105/189 (55.56%), Postives = 126/189 (66.67%), Query Frame = 1
Query:  151 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWN 699
            +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FPAF  +G++  R REIAAF AQT HETTG  GW  AP G YAWGYC+  E++PPS YC  + NYPC  GK Y+GRGP+QL+WNYNY +C                 ++DP +SFKSA WFWMT Q PKPSCH VI   W+
Sbjct:   65 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQC--GRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWS 250          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 4.037e-53
Identity = 102/197 (51.78%), Postives = 125/197 (63.45%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            CG G  C  + +G  + GG L  +IS + F ++L +RND  C  + FYTYDAF+ AAKAFP F N G+   + REIAAF  QT HETTGGW  AP G YAWGYCF+ E   PS YC  +  +PC    +YYGRGPIQ++WNYNY +C                  TDPV+SFK+A+WFWMT Q PKPSCH+VIT  W
Sbjct:   51 CGDG--CQSQCSG-SSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLRE-QNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQC--GRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGW 241          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.887e-53
Identity = 100/196 (51.02%), Postives = 124/196 (63.27%), Query Frame = 1
Query:  121 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            G G   G    G G  GG +  ++S+E+FE LL +RND  CPARGFYTYDA + AA AFP F  +G++  R RE+AAF  QT HETTGGW  AP G Y+WGYCF  EI   + YC  +  +PC    KY+GRGPIQL++NYNY                     +DPV+SFK+A+WFWMT Q PKPSCH+VIT +W
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNY--GPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQW 260          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.004e-52
Identity = 102/198 (51.52%), Postives = 123/198 (62.12%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            C SG        G G  GG++G +IS  MF+ +L +RND  C  +  FY+Y+AFI AA++F  FG +G+ T R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                  TDPV+SFKSAIWFWMT Q PKPSCH+VI   W
Sbjct:   58 CPSGPSPKPPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRW 253          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.464e-52
Identity = 104/198 (52.53%), Postives = 124/198 (62.63%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                  TD V+SFKSAIWFWMT Q PKPSCH+VIT  W
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRW 243          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.614e-52
Identity = 97/183 (53.01%), Postives = 119/183 (65.03%), Query Frame = 1
Query:  160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            G   G++  IIS  MF+ +L +RND  C  + FYTY+AFI AA++F  FG +G+ T R RE+AAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KYYGRGPIQ+++NYNY  C                  T+ V+SFKSAIWFWMTAQ PKPSCH+VIT  W
Sbjct:   79 GPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPC--GRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRW 259          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.215e-51
Identity = 102/198 (51.52%), Postives = 123/198 (62.12%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                  TDPV+SFKSAIWFWMT Q PKPSCH+VIT  W
Sbjct:   53 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRW 247          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.215e-51
Identity = 99/184 (53.80%), Postives = 119/184 (64.67%), Query Frame = 1
Query:  160 GTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            G   G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                  TD ++SFKSAIWFWMT Q PKPSCH+VIT  W
Sbjct:   60 GGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRW 241          
The following BLAST results are available for this feature:
BLAST of FC875289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIT_SOLTU1.388e-5351.74Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_GOSHI1.812e-5355.56Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI1.812e-5355.56Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_PEA4.037e-5351.78Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI9_ORYSJ6.887e-5351.02Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_SOLTU2.004e-5251.52Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_SOLTU4.464e-5252.53Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC7.614e-5253.01Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIC_SOLLC2.215e-5151.52Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI2_SOLTU2.215e-5153.80Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC31402C09EF CTVClemen1 Citrus clementina cDNA clone C31402C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875289 ID=FC875289; Name=FC875289; organism=Citrus clementina; type=EST; length=704bp
GATACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAG
GCTTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAG
GAGGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGAT
ACCGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGA
GATGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCA
GAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCA
GCCTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGC
CTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCAC
CTGGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCT
CCGTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGG
CCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAG
AAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTACT
ACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGC
ACAGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAACC
ATCA
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