FC875289

Overview
NameFC875289
Unique NameFC875289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:5..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.643e-46
Identity = 96/199 (48.24%), Postives = 118/199 (59.30%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSP-YC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            C  G  CG   T   + GG  +  IIS  +F+ +L +RND  C A+GFYTYDAF+ AA A+P F  +G+     RE+AAF AQT HETTGGW  AP G Y+WGYCF  E +  +P YC     +PC    KYYGRGPIQ+T+NYNY                     +D  +SFK+A WFWMT Q PKPSCH VIT +W
Sbjct:   57 CSGG--CGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQW 251          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.008e-44
Identity = 89/186 (47.85%), Postives = 110/186 (59.14%), Query Frame = 1
Query:  160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS--PYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            G+ G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +     RE+AAF AQT HETTGGW  AP G YAWGYCF  E    +   YC  +  +PC    KYYGRGPIQL++N+NY                     +D  +SF +A WFWMT Q PKPSCH V T +W
Sbjct:   75 GSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQW 258          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.700e-43
Identity = 86/179 (48.04%), Postives = 106/179 (59.22%), Query Frame = 1
Query:  160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R                   TDP++SFK+AIWFWMT Q  KPSCH VI  +W
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQW 184          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.700e-43
Identity = 86/179 (48.04%), Postives = 107/179 (59.78%), Query Frame = 1
Query:  160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R                   TDP++SF++AIWFWMTAQ  KPSCH VI  +W
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQW 184          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.947e-43
Identity = 82/174 (47.13%), Postives = 106/174 (60.92%), Query Frame = 1
Query:  193 SREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN----LNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWN 699
            +  MFE +LP RN+  CP +GFYTYDA+  A + +P FG +G++  R RE+AAFFAQT  ET+G         + WGYC ++E++P S YC+     +YPC   YYGRGP+QL WNYNY  C                  TDPVLSF++A+WFWM       PSCHEVIT EW+
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWS 239          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.545e-41
Identity = 80/186 (43.01%), Postives = 111/186 (59.68%), Query Frame = 1
Query:  154 GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL---NYPC-RGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            G+      +  I+S +++  L  +++D  CPARGFYTY +F+ AA  FP F  +G    R RE+AAF AQ  HETTGGW  AP G YAWG C+  EI+P S YC+     +PC  GK Y+GRGPIQ++WN+NY                     +D  ++F++A+WFWMT +  KPSCH+V+  E+
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSD--IAFQTALWFWMTPRDTKPSCHQVMVGEY 224          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.759e-40
Identity = 86/179 (48.04%), Postives = 108/179 (60.34%), Query Frame = 1
Query:  160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   A  G +A GYCF+ E                 +YGRGPIQLT   NY                     TD  +SFK+AIWFWMTAQ  KPSCH+VIT +W
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVRE----------GNQMGSGFYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQW 178          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.732e-40
Identity = 91/198 (45.96%), Postives = 113/198 (57.07%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEI----SPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            C +  +     +G    G  +G +I++ +F  +LP R++ +CPARGFYTYDAFI AA +FPAFG SG    +  RE+AAFF QT HETTGG R +   ++ WGYCF  EI    SPP             YYGRGPIQLT   NY                    +TD V+SFK+AIWFWMTAQ  KPSCH+VI   W
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAA--GNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRW 193          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.541e-39
Identity = 86/192 (44.79%), Postives = 100/192 (52.08%), Query Frame = 1
Query:  121 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            G G   G    G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HET G W  A G +Y WGYC +                              NYNY  C                  TDP ++FK+A+WFWMT Q PKPSCH VIT+ W
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLLQEPELVE--TDPFIAFKTALWFWMTPQSPKPSCHAVITESW 225          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.392e-39
Identity = 86/179 (48.04%), Postives = 103/179 (57.54%), Query Frame = 1
Query:  160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696
            GT    +G I++ ++F+ +L  RND RC A  FYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   +P G YA GYCF+ E                 YYGRGPIQLT   NY                     TD  +SFK+AIWFWMT Q  KPSCH+VIT  W
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLRE----------GNQMGNGYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRW 185          
The following BLAST results are available for this feature:
BLAST of FC875289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI3_ORYSJ1.643e-4648.24Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI12_ORYSJ2.008e-4447.85Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC1.700e-4348.04Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLCI1.700e-4348.04Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI8_POPTR4.947e-4347.13Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI10_ORYSJ3.545e-4143.01Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC1.759e-4048.04Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_ORYSJ8.732e-4045.96Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_POPTR2.541e-3944.79Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIT_PETHY7.392e-3948.04Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31402C09EF CTVClemen1 Citrus clementina cDNA clone C31402C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875289 ID=FC875289; Name=FC875289; organism=Citrus clementina; type=EST; length=704bp
GATACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAG
GCTTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAG
GAGGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGAT
ACCGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGA
GATGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCA
GAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCA
GCCTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGC
CTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCAC
CTGGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCT
CCGTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGG
CCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAG
AAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTACT
ACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGC
ACAGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAACC
ATCA
back to top