FC875289
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2) HSP 1 Score: 186.037 bits (471), Expect = 1.643e-46 Identity = 96/199 (48.24%), Postives = 118/199 (59.30%), Query Frame = 1 Query: 118 CGSGVVCGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSP-YC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696 C G CG T + GG + IIS +F+ +L +RND C A+GFYTYDAF+ AA A+P F +G+ RE+AAF AQT HETTGGW AP G Y+WGYCF E + +P YC +PC KYYGRGPIQ+T+NYNY +D +SFK+A WFWMT Q PKPSCH VIT +W Sbjct: 57 CSGG--CGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQW 251
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2) HSP 1 Score: 179.104 bits (453), Expect = 2.008e-44 Identity = 89/186 (47.85%), Postives = 110/186 (59.14%), Query Frame = 1 Query: 160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS--PYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696 G+ G + I+SR +F+ +L +RND CPA FYTYDAF+ AA AFP F +G + RE+AAF AQT HETTGGW AP G YAWGYCF E + YC + +PC KYYGRGPIQL++N+NY +D +SF +A WFWMT Q PKPSCH V T +W Sbjct: 75 GSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQW 258
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.700e-43 Identity = 86/179 (48.04%), Postives = 106/179 (59.22%), Query Frame = 1 Query: 160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696 GT G I++RE+FE +L +RN+ CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG G + GYCF+ +I +YYGRGPIQLT NY R TDP++SFK+AIWFWMT Q KPSCH VI +W Sbjct: 21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQW 184
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.700e-43 Identity = 86/179 (48.04%), Postives = 107/179 (59.78%), Query Frame = 1 Query: 160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696 GT G I++RE+FE +L +RN+ CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG G + GYCF+ +I +YYGRGPIQLT NY R TDP++SF++AIWFWMTAQ KPSCH VI +W Sbjct: 21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQW 184
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 4.947e-43 Identity = 82/174 (47.13%), Postives = 106/174 (60.92%), Query Frame = 1 Query: 193 SREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN----LNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWN 699 + MFE +LP RN+ CP +GFYTYDA+ A + +P FG +G++ R RE+AAFFAQT ET+G + WGYC ++E++P S YC+ +YPC YYGRGP+QL WNYNY C TDPVLSF++A+WFWM PSCHEVIT EW+ Sbjct: 68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWS 239
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.545e-41 Identity = 80/186 (43.01%), Postives = 111/186 (59.68%), Query Frame = 1 Query: 154 GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL---NYPC-RGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696 G+ + I+S +++ L +++D CPARGFYTY +F+ AA FP F +G R RE+AAF AQ HETTGGW AP G YAWG C+ EI+P S YC+ +PC GK Y+GRGPIQ++WN+NY +D ++F++A+WFWMT + KPSCH+V+ E+ Sbjct: 41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSD--IAFQTALWFWMTPRDTKPSCHQVMVGEY 224
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.759e-40 Identity = 86/179 (48.04%), Postives = 108/179 (60.34%), Query Frame = 1 Query: 160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696 G+ ++G I++ ++F ++L RND RCPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG A G +A GYCF+ E +YGRGPIQLT NY TD +SFK+AIWFWMTAQ KPSCH+VIT +W Sbjct: 13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVRE----------GNQMGSGFYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQW 178
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 8.732e-40 Identity = 91/198 (45.96%), Postives = 113/198 (57.07%), Query Frame = 1 Query: 118 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEI----SPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696 C + + +G G +G +I++ +F +LP R++ +CPARGFYTYDAFI AA +FPAFG SG + RE+AAFF QT HETTGG R + ++ WGYCF EI SPP YYGRGPIQLT NY +TD V+SFK+AIWFWMTAQ KPSCH+VI W Sbjct: 14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAA--GNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRW 193
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2) HSP 1 Score: 162.155 bits (409), Expect = 2.541e-39 Identity = 86/192 (44.79%), Postives = 100/192 (52.08%), Query Frame = 1 Query: 121 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696 G G G G G G L II MF+D+L YRND +CPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF QT HET G W A G +Y WGYC + NYNY C TDP ++FK+A+WFWMT Q PKPSCH VIT+ W Sbjct: 66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLLQEPELVE--TDPFIAFKTALWFWMTPQSPKPSCHAVITESW 225
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 7.392e-39 Identity = 86/179 (48.04%), Postives = 103/179 (57.54%), Query Frame = 1 Query: 160 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 696 GT +G I++ ++F+ +L RND RC A FYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG +P G YA GYCF+ E YYGRGPIQLT NY TD +SFK+AIWFWMT Q KPSCH+VIT W Sbjct: 20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLRE----------GNQMGNGYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRW 185 The following BLAST results are available for this feature:
BLAST of FC875289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875289 ID=FC875289; Name=FC875289; organism=Citrus clementina; type=EST; length=704bpback to top |