FC875289

Overview
NameFC875289
Unique NameFC875289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:5..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 68/192 (35.42%), Postives = 86/192 (44.79%), Query Frame = 1
Query:  115 NCGSGVVCGERDT-----------GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWR-DAPGGEYAWGYCFISEISPPSPYCNLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWMT 648
            NC SG   G   T           G G  G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+     REIAAFFA   HETT     +   G+    YC   + +         YPC    KYYGRGP+QL+WNYNY                     TD   SFK+A+WFWMT
Sbjct:   55 NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAA--------QYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 61/177 (34.46%), Postives = 85/177 (48.02%), Query Frame = 1
Query:  118 CGSGVVCGER-DTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWM 645
            CG G   G   D   G     +  I+++E F D +  +    CP + FYT   F+EA  A+P FG    +  R REIAA+FA   HET           +A  YC  S+  P    CN N     +Y+GRGP+QL+WNYNY+                     DP++SFK+++WFW+
Sbjct:   25 CGPGCQAGPCWDPCEGDGTLTVSDIVTQE-FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYP----CNPN----KEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVG--RDPIISFKTSLWFWI 190          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.508e-18
Identity = 63/191 (32.98%), Postives = 85/191 (44.50%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTDGGELG---------KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYCNLN---YPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWM 645
            C SG   G    G G  GG  G         + +  E F + +  +    C  + FYT  +F+ AA ++  F          REIAAFFA   HET                C+I+EI+  S  YC+ N   +PC+   KYYGRGP+Q++WNYNY                      DP +SFK+A+WFWM
Sbjct:   57 CRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM 232          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.395e-18
Identity = 61/183 (33.33%), Postives = 82/183 (44.81%), Query Frame = 1
Query:  118 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYCN----LNYPCRGK--YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWM 645
            CG+G   G   T        +   I    F + +  + D  C  + FYT DAF+ A  ++  FG  G+E    REIAA FA   HET               +C+I EI   S  YC+      YPC     Y+GRGPIQL+WN+NY                    + D V+SFK+A+W+WM
Sbjct:   47 CGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          
BLAST of FC875289 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 51/141 (36.17%), Postives = 70/141 (49.65%), Query Frame = 1
Query:  241 CPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYC---NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXTTDPVLSFKSAIWFWM 645
            C  + FYT  +F+ AA+++  F N        REIAAFFA   HET                C+I+EI+  +  YC   N  +PC+   KYYGRGP+Q++WN+NY                      DP +SFK+A+WFWM
Sbjct:  104 CAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229          
The following BLAST results are available for this feature:
BLAST of FC875289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIP_BETVU1.186e-2035.42Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIT_DIOJA2.236e-1934.46Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI5_ORYSJ5.508e-1832.98Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU9.395e-1833.33Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ORYSJ1.602e-1736.17Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC31402C09EF CTVClemen1 Citrus clementina cDNA clone C31402C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875289 ID=FC875289; Name=FC875289; organism=Citrus clementina; type=EST; length=704bp
GATACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAG
GCTTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAG
GAGGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGAT
ACCGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGA
GATGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCA
GAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCA
GCCTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGC
CTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCAC
CTGGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCT
CCGTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGG
CCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAG
AAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTACT
ACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGC
ACAGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAACC
ATCA
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