FC875296

Overview
NameFC875296
Unique NameFC875296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5307 contig Ccv1_Contig5307:173..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: GBLP_LEIMA (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania major PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 53/183 (28.96%), Postives = 92/183 (50.27%), Query Frame = 2
Query:   35 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAK 583
            + + HE+ V ++ + P+ E    ++++GS D T+K+   +  + ERT  GH   V +V   P G + AS   D    ++D+ T   +  +    S + Q+ F P    + VA   S SV  +D  +  +IA L+   P+G KP++        +S+AWS DG  + SG  D  I V+ ++ A+
Sbjct:  145 LRDGHEDWVSSICFSPSLEH--PIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINV-ESPINQIGFSPNRFWMCVATERSLSV--YDLESKAVIAELT---PDGAKPSE-------CISIAWSADGNTLYSGHKDNLIRVWSISDAE 312          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WDR69_HUMAN (WD repeat-containing protein 69 OS=Homo sapiens GN=WDR69 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 53/192 (27.60%), Postives = 85/192 (44.27%), Query Frame = 2
Query:  104 LLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 679
            L+ TGS+D T KL    + +   T  GH   ++S++ + SG    + S D  V V+D DT   +  L    +E+    F+    +L + G    + KLWD      +ATL+    E             +L   +   G+ IA+ S DGT  +F     K +  LEGH   +  + ++P    +L  +SD T
Sbjct:  191 LVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFN-WDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDE-------------ILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKT 368          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: YH92_CAEEL (Uncharacterized WD repeat-containing protein ZC302.2 OS=Caenorhabditis elegans GN=ZC302.2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 55/196 (28.06%), Postives = 96/196 (48.98%), Query Frame = 2
Query:  113 TGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 697
            TGS D+ +K+    DM   +T   H LG+   +   +    ASAS D+ V++FDV + A + T+    + V+   F+P+ + +A A G   +V++WD  T   +  +    P    P         + S++++ DG  +A+ S DG I V+D      L  L +    PV  + +SP + + L SA  D+ + ++D
Sbjct:  230 TGSADKQIKVWNTVDMTYLQTLASHQLGINDFSWSSNSQFIASASDDTTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLIASA-GFDETVRVWDFKTGLCVKCI----PAHSDP---------ITSISYNHDGNTMATSSYDGCIRVWDAASGSCLKTLVDTDHAPVTFVCFSP-NGKYLLSAQLDSSLKLWD 410          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WDR69_MACFA (WD repeat-containing protein 69 OS=Macaca fascicularis GN=WDR69 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 53/192 (27.60%), Postives = 85/192 (44.27%), Query Frame = 2
Query:  104 LLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 679
            L+ TGS+D T KL    + +   T  GH   ++S++ + SG    + S D  V V+D DT   +  L    +E+    F+    +L + G    +  LWD      +ATL+    E             +L   +   G+ IA+ S DGT  +F     K +  LEGH   +  + ++P   R+L  +SD T
Sbjct:  191 LVATGSMDTTAKLWNIQNGEEVCTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGGKVNILIGHCAEISSALFN-WDCSLILTGSMDKTCMLWDATNGKCVATLTGHDDE-------------ILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNRLLTGSSDKT 368          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: SNR40_PONAB (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 53/200 (26.50%), Postives = 98/200 (49.00%), Query Frame = 2
Query:   98 PALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 691
            P L+ TGS D TVKL         +T   +   V++V  + +     S  +D+ ++V+D+  N    T+      V  +    +G+ L ++     +V++WD   +        P+   +K    +  + +K +L  +WSPDG +IA+GS D ++ V+D T  + L+ L GH   +  + + P +P ++ SAS D  ++M
Sbjct:  164 PQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPDEP-IIISASSDKRLYM 353          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: NUDF_CRYNE (Nuclear distribution protein PAC1 OS=Cryptococcus neoformans GN=PAC1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 57/175 (32.57%), Postives = 80/175 (45.71%), Query Frame = 2
Query:  173 TNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 697
            T   H   V  +A HP+  + ASAS D+ V+++D +      TL+     V  + FDP+G  +A       ++KLWDTA             + L   D S     V SV + PDG  + S S D TI V+ V+    +    GH   VR  V S  D R L SAS+D    ++D
Sbjct:  100 TLASHRAPVTRLAFHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATC-SSDLTLKLWDTAN-------QYTNVKTLHGHDHS-----VSSVRFMPDGETLVSASRDKTIRVWQVSSGYCIKTFSGHAEWVREAVPSE-DGRWLVSASNDQTSRIWD 260          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: RCO1_NEUCR (Transcriptional repressor rco-1 OS=Neurospora crassa GN=rco-1 PE=4 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 52/171 (30.41%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  191 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVT--RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 697
            L + SV   P G   A+ + D  +RV+D+ +     T      +++ + F   G T+A +G G  +V+LWD  T    + LSI              +  V +VA SPD + +A+GS+D ++ V+D+    A+ L   +GH   V S+ +SP D R L S S D  + M++
Sbjct:  345 LYIRSVCFSPDGKYLATGAEDKLIRVWDIQSRTIRNTFHGHEQDIYSLDFSRDGRTIA-SGSGDRTVRLWDIETGQNTSVLSI--------------EDGVTTVAISPDKQFVAAGSLDKSVRVWDMRGYLAERLEGPDGHKDSVYSVAFSP-DGRNLVSGSLDKTIKMWE 499          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: PRP19_CAEEL (Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 56/208 (26.92%), Postives = 97/208 (46.63%), Query Frame = 2
Query:   77 VPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL-KPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 697
            + A + +  L LTG +D+TV L   +  Q+ +T  GH   + +V  HP  I A SAS DS +RV+    ++S A ++   + V         T +++   G   +   D + W   A   I   + L K + +  S+  V S+ + PDG    +G+ D  + ++D+          GH   VRS+ +S  +   L + S+D  V ++D
Sbjct:  214 ITALDIKGNLSLTGGIDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPV---------TDISLNASGDYILSASDDSYW---AFSDIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSE-NGYYLATGSEDGEVKLWD 408          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: GBLP_DROME (Guanine nucleotide-binding protein subunit beta-like protein OS=Drosophila melanogaster GN=Rack1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 55/179 (30.73%), Postives = 89/179 (49.72%), Query Frame = 2
Query:   38 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVT 574
            E+ H + V  V + P   + P ++  G  D TVK+    + +L+  + GH   + +V   P G +  S   DS   ++D++   ++ TLE     +  + F P    L VA G   S+K+WD A    +  L   RPE + PT K+   +  LS+AWS DG+ + +G  D TI V+ V+
Sbjct:  145 EDGHTDWVSCVRFSP-NHSNPIIVSCG-WDRTVKVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLE-HNDIINALCFSPNRYWLCVAYG--PSIKIWDLACKKTVEEL---RPEVVSPTSKADQPQ-CLSLAWSTDGQTLFAGYSDNTIRVWQVS 314          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 54/217 (24.88%), Postives = 97/217 (44.70%), Query Frame = 2
Query:   47 HEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 697
            H   + +VT+    +    L+  G+   T+KL   ++ ++ RT TGH    +SV  HP G   AS SLD+ ++++D+     I T +     V  ++F P G  + V+GG    VK+WD     L+             T+  S +  + S+ + P    +A+GS D T+  +D+   + +         VR L ++P    VL    +   +  ++
Sbjct:   58 HSSGIDSVTF----DASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWV-VSGGEDNIVKVWDLTAGKLL-------------TEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVLCGLQESLKIFSWE 256          
The following BLAST results are available for this feature:
BLAST of FC875296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
GBLP_LEIMA1.994e-1228.96Guanine nucleotide-binding protein subunit beta-li... [more]
WDR69_HUMAN3.401e-1227.60WD repeat-containing protein 69 OS=Homo sapiens GN... [more]
YH92_CAEEL4.441e-1228.06Uncharacterized WD repeat-containing protein ZC302... [more]
WDR69_MACFA4.441e-1227.60WD repeat-containing protein 69 OS=Macaca fascicul... [more]
SNR40_PONAB7.576e-1226.50U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
NUDF_CRYNE9.894e-1232.57Nuclear distribution protein PAC1 OS=Cryptococcus ... [more]
RCO1_NEUCR1.292e-1130.41Transcriptional repressor rco-1 OS=Neurospora cras... [more]
PRP19_CAEEL1.292e-1126.92Pre-mRNA-processing factor 19 homolog OS=Caenorhab... [more]
GBLP_DROME1.292e-1130.73Guanine nucleotide-binding protein subunit beta-li... [more]
KTNB1_ARATH1.688e-1124.88Katanin p80 WD40 repeat-containing subunit B1 homo... [more]

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Properties
Property NameValue
Genbank descriptionC31402D05EF CTVClemen1 Citrus clementina cDNA clone C31402D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875296 ID=FC875296; Name=FC875296; organism=Citrus clementina; type=EST; length=699bp
GACCAACCAAATGAAATTTGCTGGTCTAAAATCAGTCGAGAACGCGCACG
AGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCGACCGAGACTCGACCG
GCGCTCTTGCTGACGGGATCGTTGGACGAGACCGTGAAGCTGGGGCGGCC
CGACGACATGCAGCTGGAGCGGACCAACACTGGCCACTGTTTGGGCGTAG
TCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCTGCCTCTGCTTCTCTC
GACAGCTTTGTTCGAGTATTTGATGTCGACACCAACGCCTCTATTGCTAC
TCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGCAGTTCGATCCTAAGG
GTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCATCTGTAAAGCTCTGG
GACACAGCCACTTGGAATCTGATTGCCACCCTGTCAATTCCTCGTCCAGA
AGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGAAGTTTGTTCTATCAG
TTGCATGGAGTCCTGATGGCAGACGAATTGCTTCTGGTTCAATGGATGGC
ACAATTTCTGTTTTTGATGTTACCCGTGCCAAATTCCTGCATCATCTGGA
AGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATTCCCCTGTTGATCCAC
GTGTTCTCTTCTCTGCATCAGATGATACTCATGTGCACATGTATGATGC
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