FC875302

Overview
NameFC875302
Unique NameFC875302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875302_ssr684 microsatellite FC875302_ssr684:684..695. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10203 contig Ccv1_Contig10203:2..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 2.306e-110
Identity = 189/198 (95.45%), Postives = 191/198 (96.46%), Query Frame = 2 
Query:   74 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 667
            MALPNQ TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF KKYEPTIGVEVHPLDF TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE+ AL PPEV IDLA QQ
Sbjct:    1 MALPNQGTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAMQQ 198
[Close]
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 2.306e-110
Identity = 189/198 (95.45%), Postives = 191/198 (96.46%), Query Frame = 2 
Query:   74 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 667
            MALPNQ TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF KKYEPTIGVEVHPLDF TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE+ AL PPEV IDLA QQ
Sbjct:    1 MALPNQGTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAMQQ 198
[Close]
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 8.200e-108
Identity = 184/186 (98.92%), Postives = 185/186 (99.46%), Query Frame = 2 
Query:  110 SFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 667
            +FKLVIVGDGGTGKTTFVKRHLTGEF KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ
Sbjct:    1 NFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 186
[Close]
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 8.200e-108
Identity = 184/186 (98.92%), Postives = 185/186 (99.46%), Query Frame = 2 
Query:  110 SFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 667
            +FKLVIVGDGGTGKTTFVKRHLTGEF KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ
Sbjct:    1 NFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 186
[Close]
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSJ (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica GN=RAN3 PE=2 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 3.232e-96
Identity = 164/204 (80.39%), Postives = 181/204 (88.73%), Query Frame = 2 
Query:   65 NQLMALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQHMK 676
            ++  ALP+   V YPSFKL++VGDGGTGKTTFVKRH+TGEF K+YEPTIGVEV PLDF T+ GK+RF CWDTAGQEKFGGLRDGYYIHG CAIIMFDVT+RLTYKNVPTWH+D+CRVC+NIPIVLCGNKVD+KNRQVKAK VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL GD NL FVE  AL P +V IDL AQQ ++
Sbjct:    2 SRAQALPDPAAVGYPSFKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCDNIPIVLCGNKVDMKNRQVKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTGDMNLRFVEELALLPADVTIDLIAQQKIE 205
[Close]
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSI (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. indica GN=RAN3 PE=2 SV=2)

HSP 1 Score: 351.288 bits (900), Expect = 3.232e-96
Identity = 164/204 (80.39%), Postives = 181/204 (88.73%), Query Frame = 2 
Query:   65 NQLMALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQHMK 676
            ++  ALP+   V YPSFKL++VGDGGTGKTTFVKRH+TGEF K+YEPTIGVEV PLDF T+ GK+RF CWDTAGQEKFGGLRDGYYIHG CAIIMFDVT+RLTYKNVPTWH+D+CRVC+NIPIVLCGNKVD+KNRQVKAK VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL GD NL FVE  AL P +V IDL AQQ ++
Sbjct:    2 SRAQALPDPAAVGYPSFKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCDNIPIVLCGNKVDMKNRQVKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTGDMNLRFVEELALLPADVTIDLIAQQKIE 205
[Close]
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: GSP2_YEAST (GTP-binding nuclear protein GSP2/CNR2 OS=Saccharomyces cerevisiae GN=GSP2 PE=1 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.190e-90
Identity = 156/193 (80.83%), Postives = 172/193 (89.12%), Query Frame = 2 
Query:   74 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 652
            M+ P Q   + P+FKLV+VGDGGTGKTTFVKRHLTGEF KKY  TIGVEVHPL F+TN G+I+F  WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D
Sbjct:    1 MSAPAQNNAEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVD 193
[Close]
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: GSP1_YEAST (GTP-binding nuclear protein GSP1/CNR1 OS=Saccharomyces cerevisiae GN=GSP1 PE=1 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.718e-89
Identity = 158/206 (76.70%), Postives = 176/206 (85.44%), Query Frame = 2 
Query:  101 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID-LAAQQHMKXXXXXXXVNSPDE 715
            + P+FKLV+VGDGGTGKTTFVKRHLTGEF KKY  TIGVEVHPL F+TN G+I+F  WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D    QQ+ +       +  PDE
Sbjct:    9 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDE 214
[Close]
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.930e-89
Identity = 156/184 (84.78%), Postives = 167/184 (90.76%), Query Frame = 2 
Query:  107 PSFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA 658
            P+FKLV+VGDGGTGKTTFVKRHLTGEF KKY  T+GVEVHPL F TN G+IRF  WDTAGQEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEVQ+D A
Sbjct:    8 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPA 191
[Close]
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.113e-88
Identity = 157/206 (76.21%), Postives = 175/206 (84.95%), Query Frame = 2 
Query:  101 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID-LAAQQHMKXXXXXXXVNSPDE 715
            + P+FKLV+VGDGGTGKTTFVKRHLTGEF KKY  TIGVEVHPL F+TN G+I+F  WDTAGQEKFGGLRDGYYI+ QC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D    QQ+ +       +  PDE
Sbjct:    4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLDFVASPALAPPEVQVDEQLMQQYQQEMERATALPLPDE 209
The following BLAST results are available for this feature:
BLAST of FC875302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN2_ORYSJ2.306e-11095.45GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN2_ORYSI2.306e-11095.45GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN1B_LOTJA8.200e-10898.92GTP-binding nuclear protein Ran1B (Fragment) OS=Lo... [more]
RAN1A_LOTJA8.200e-10898.92GTP-binding nuclear protein Ran1A (Fragment) OS=Lo... [more]
RAN3_ORYSJ3.232e-9680.39GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ORYSI3.232e-9680.39GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
GSP2_YEAST1.190e-9080.83GTP-binding nuclear protein GSP2/CNR2 OS=Saccharom... [more]
GSP1_YEAST1.718e-8976.70GTP-binding nuclear protein GSP1/CNR1 OS=Saccharom... [more]
RAN_CAEEL2.930e-8984.78GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
GSP1_ASHGO1.113e-8876.21GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]

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Properties
Property NameValue
Genbank descriptionC31402D11EF CTVClemen1 Citrus clementina cDNA clone C31402D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875302 ID=FC875302; Name=FC875302; organism=Citrus clementina; type=EST; length=744bp
AAACACTCCAACATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAAA
ATCCAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTT
GATTATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAA
GACTACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGGGAAGAAATATG
AACCGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGT
GGAAAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGG
TGGTCTTAGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATGT
TTGATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGT
GATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAA
GGTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACA
GGAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAAC
TTTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAA
CTTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCG
ATTTGGCTGCTCAGCAACACATGAAGCTGAACTTGCTGCTGCTGCTAGTC
AACTCTCCAGATGAGATGATGAGCCCTCGAGTGAAGAAGACATG
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