FC875302

Overview
NameFC875302
Unique NameFC875302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875302_ssr684 microsatellite FC875302_ssr684:684..695. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10203 contig Ccv1_Contig10203:2..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: GSP1_CANGA (GTP-binding nuclear protein GSP1/Ran OS=Candida glabrata GN=GSP1 PE=3 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.899e-88
Identity = 157/208 (75.48%), Postives = 175/208 (84.13%), Query Frame = 2
Query:   95 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID-LAAQQHMKXXXXXXXVNSPDE 715
            + + P+FKLV+VGDGGTGKTTFVKRHLTGEF KKY  TIGVEVHPL F TN G+I+F  WDTAGQEKFGGLRDGYYI+ QC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D    QQ+ +       +  PDE
Sbjct:    2 SAEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFHTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDE 209          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAN_BRUMA (GTP-binding nuclear protein Ran OS=Brugia malayi PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.678e-87
Identity = 152/184 (82.61%), Postives = 164/184 (89.13%), Query Frame = 2
Query:  101 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 652
            D P+FKLV+VGDGGTGKTTFVKRHLTG+F KKY  T+GVEVHPL F TN G+IRF  WDTAGQEKFGGLRDGYYI GQCA  MFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP L+LARKL GDPNL FV  PALAPPEVQ+D
Sbjct:    6 DIPTFKLVLVGDGGTGKTTFVKRHLTGDFEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAFNMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMD 189          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.678e-87
Identity = 153/206 (74.27%), Postives = 174/206 (84.47%), Query Frame = 2
Query:  101 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDL-AAQQHMKXXXXXXXVNSPDE 715
            + P+FKLV+VGDGGTGKTTFVKRHLTGEF KKY  T+GVEV+PL F TN G+++F  WDTAGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPEVQ+D    Q++ +       +  PDE
Sbjct:    4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVNPLGFHTNFGELKFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPEVQVDADLMQKYQQEMEQATALPLPDE 209          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 6.110e-87
Identity = 149/188 (79.26%), Postives = 165/188 (87.77%), Query Frame = 2
Query:   89 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 652
            Q+  D P+FK V+VGDGGTGKTTFVKRH+TGEF KKY  T+GVEVHPL F TN G IRF  WDTAGQEKFGGLRDGYYI GQCA+IMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PAL PPEV++D
Sbjct:    3 QEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMD 190          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: SPI1_SCHPO (GTP-binding nuclear protein spi1 OS=Schizosaccharomyces pombe GN=spi1 PE=1 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 5.172e-86
Identity = 151/187 (80.75%), Postives = 164/187 (87.70%), Query Frame = 2
Query:   92 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 652
            Q  + P+FKLV+VGDGGTGKTTFVKRHLTGEF KKY  T+GVEVHPL F TN G+I F  WDTAGQEK GGLRDGYYI GQC IIMFDVT+R+TYKNVP W RDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+PNL FV SPALAPPEVQ+D
Sbjct:    3 QPQNVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENIPIVLCGNKVDVKERKVKAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPNLEFVASPALAPPEVQVD 189          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAN_ONCVO (GTP-binding nuclear protein Ran OS=Onchocerca volvulus GN=ran-1 PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 6.755e-86
Identity = 151/184 (82.07%), Postives = 163/184 (88.59%), Query Frame = 2
Query:  101 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 652
            D P+FKLV+VGDGGTGKTTFVKRHLTG+  KKY  T+GVEVHPL F TN G+IRF  WDTAGQEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGN VDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP L+L RKL GDPNL FV  PALAPPEVQ+D
Sbjct:    6 DIPTFKLVLVGDGGTGKTTFVKRHLTGDPEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNFVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLVRKLLGDPNLEFVAMPALAPPEVQMD 189          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 6.755e-86
Identity = 151/186 (81.18%), Postives = 165/186 (88.71%), Query Frame = 2
Query:  113 FKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID--LAAQ 664
            FKLV+VGDGGTGKTTFVKRHLTGEF KKY  T+GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FVE PALAPPE+ +D  LAAQ
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQ 195          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAN_XENLA (GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.152e-85
Identity = 154/202 (76.24%), Postives = 168/202 (83.17%), Query Frame = 2
Query:  113 FKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA-AQQHMKXXXXXXXVNSPDE 715
            FKLV+VGDGGTGKTTFVKRHLTGEF KKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D A A Q+ +          PDE
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQNAQATALPDE 212          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAN_CHICK (GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.152e-85
Identity = 154/202 (76.24%), Postives = 168/202 (83.17%), Query Frame = 2
Query:  113 FKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA-AQQHMKXXXXXXXVNSPDE 715
            FKLV+VGDGGTGKTTFVKRHLTGEF KKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D A A Q+ +          PDE
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQIAQTTALPDE 212          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAN_RAT (GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3)

HSP 1 Score: 315.849 bits (808), Expect = 1.505e-85
Identity = 152/186 (81.72%), Postives = 164/186 (88.17%), Query Frame = 2
Query:  113 FKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID--LAAQ 664
            FKLV+VGDGGTGKTTFVKRHLTGEF KKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D  LAAQ
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQ 196          
The following BLAST results are available for this feature:
BLAST of FC875302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSP1_CANGA1.899e-8875.48GTP-binding nuclear protein GSP1/Ran OS=Candida gl... [more]
RAN_BRUMA4.678e-8782.61GTP-binding nuclear protein Ran OS=Brugia malayi P... [more]
GSP1_CANAL4.678e-8774.27GTP-binding nuclear protein GSP1/Ran OS=Candida al... [more]
RAN_DROME6.110e-8779.26GTP-binding nuclear protein Ran OS=Drosophila mela... [more]
SPI1_SCHPO5.172e-8680.75GTP-binding nuclear protein spi1 OS=Schizosaccharo... [more]
RAN_ONCVO6.755e-8682.07GTP-binding nuclear protein Ran OS=Onchocerca volv... [more]
RAN_DANRE6.755e-8681.18GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
RAN_XENLA1.152e-8576.24GTP-binding nuclear protein Ran OS=Xenopus laevis ... [more]
RAN_CHICK1.152e-8576.24GTP-binding nuclear protein Ran OS=Gallus gallus G... [more]
RAN_RAT1.505e-8581.72GTP-binding nuclear protein Ran OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionC31402D11EF CTVClemen1 Citrus clementina cDNA clone C31402D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875302 ID=FC875302; Name=FC875302; organism=Citrus clementina; type=EST; length=744bp
AAACACTCCAACATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAAA
ATCCAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTT
GATTATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAA
GACTACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGGGAAGAAATATG
AACCGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGT
GGAAAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGG
TGGTCTTAGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATGT
TTGATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGT
GATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAA
GGTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACA
GGAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAAC
TTTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAA
CTTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCG
ATTTGGCTGCTCAGCAACACATGAAGCTGAACTTGCTGCTGCTGCTAGTC
AACTCTCCAGATGAGATGATGAGCCCTCGAGTGAAGAAGACATG
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