FC875302

Overview
NameFC875302
Unique NameFC875302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875302_ssr684 microsatellite FC875302_ssr684:684..695. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10203 contig Ccv1_Contig10203:2..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAP2A_PONAB (Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2A PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 46/162 (28.40%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  113 FKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 586
            +K+V++G GG GK+    + +TG F +KY+PTI  + +  +   +         DTAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNKVD+++ R+V + +      +    + E SAKS    ++ F  + R++
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAP2A_MOUSE (Ras-related protein Rap-2a OS=Mus musculus GN=Rap2a PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 46/162 (28.40%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  113 FKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 586
            +K+V++G GG GK+    + +TG F +KY+PTI  + +  +   +         DTAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNKVD+++ R+V + +      +    + E SAKS    ++ F  + R++
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAP2A_HUMAN (Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2A PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 46/162 (28.40%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  113 FKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 586
            +K+V++G GG GK+    + +TG F +KY+PTI  + +  +   +         DTAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNKVD+++ R+V + +      +    + E SAKS    ++ F  + R++
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RABC_DICDI (Ras-related protein RabC OS=Dictyostelium discoideum GN=rabC PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 45/167 (26.95%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  113 FKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 586
            +K+++VG+ G GK++ + R     F + + PT+GV+  V  +        ++   WDTAGQE+F  +   +Y      I+++DVT   +++    W  D+ +  ++ + I+L GNK D+    V  ++VTF + + +      ++ E+SAK N    + F  L + +
Sbjct:    7 YKIILVGESGVGKSSILVRFTDNTFSQHFAPTLGVDFNVKTIRNKETGQTVKLQLWDTAGQERFKSITQTFYRGSHGVIVVYDVTDPKSFERCKNWVEDINQYTQDGMIIILVGNKSDM----VAQRKVTFEQGQEMAEQLKTKFLEVSAKENNGVTQVFDLLVQDI 169          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 53/165 (32.12%), Postives = 84/165 (50.91%), Query Frame = 2
Query:  116 KLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTN---CGKI--RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 586
            K+ ++GD G GK++ V R +   F     PTIG       F T    CG    +F  WDTAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK D+ + R+V  K    + +       E SAK+  N E+ F  ++R++
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 166          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 51/172 (29.65%), Postives = 88/172 (51.16%), Query Frame = 2
Query:  113 FKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTI----------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 586
            +KLV+VG GG GK+    + +   F  +Y+PTI            EV  LD             DTAGQE++G +R+ Y   G+  ++++ +T+R +++ + T+H+ + RV   +  P+V+  NK D++  RQV   +     R    ++ E SAK   N ++ F  L R++
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCVIDDEVALLDVL-----------DTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQVGMNEGRDLARHFGCKFVETSAKVRINVDQAFQDLVREI 171          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RASL_COLTR (Ras-like protein OS=Colletotrichum trifolii GN=RAS PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 48/172 (27.91%), Postives = 87/172 (50.58%), Query Frame = 2
Query:  113 FKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTI----------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 586
            +KLV+VG GG GK+    + +   F  +Y+PTI            EV  LD             DTAGQE++  +R+ Y   G+  ++++ +T+R +++ + T+ + + RV +    P+V+ GNK D++  +   +Q      +    ++ E SAKS  N +K F  + R++
Sbjct:    9 YKLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRKQCVIDEEVALLDVL-----------DTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEITTFQQQILRVKDKDYFPMVVVGNKCDLEGEREVTRQEGEALAKSFGCKFIETSAKSRINVDKAFYDIVREI 169          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RASH_RAT (GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 47/161 (29.19%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  113 FKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 586
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RASH_HUMAN (GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 47/161 (29.19%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  113 FKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 586
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163          
BLAST of FC875302 vs. ExPASy Swiss-Prot
Match: RASK_CYPCA (GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.423e-13
Identity = 47/161 (29.19%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  113 FKLVIVGDGGTGKTTFVKRHLTGEFGKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 586
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRSVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 163          
The following BLAST results are available for this feature:
BLAST of FC875302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP2A_PONAB2.007e-1328.40Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2... [more]
RAP2A_MOUSE2.007e-1328.40Ras-related protein Rap-2a OS=Mus musculus GN=Rap2... [more]
RAP2A_HUMAN2.007e-1328.40Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2... [more]
RABC_DICDI2.007e-1326.95Ras-related protein RabC OS=Dictyostelium discoide... [more]
RAB31_HUMAN2.007e-1332.12Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
RAS_LENED2.621e-1329.65Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RASL_COLTR2.621e-1327.91Ras-like protein OS=Colletotrichum trifolii GN=RAS... [more]
RASH_RAT2.621e-1329.19GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=... [more]
RASH_HUMAN2.621e-1329.19GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1[more]
RASK_CYPCA3.423e-1329.19GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31402D11EF CTVClemen1 Citrus clementina cDNA clone C31402D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875302 ID=FC875302; Name=FC875302; organism=Citrus clementina; type=EST; length=744bp
AAACACTCCAACATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAAA
ATCCAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTT
GATTATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAA
GACTACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGGGAAGAAATATG
AACCGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGT
GGAAAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGG
TGGTCTTAGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATGT
TTGATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGT
GATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAA
GGTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACA
GGAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAAC
TTTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAA
CTTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCG
ATTTGGCTGCTCAGCAACACATGAAGCTGAACTTGCTGCTGCTGCTAGTC
AACTCTCCAGATGAGATGATGAGCCCTCGAGTGAAGAAGACATG
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