FC875307

Overview
NameFC875307
Unique NameFC875307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1A_MOUSE (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Mus musculus GN=Ppp1ca PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.019e-46
Identity = 79/155 (50.97%), Postives = 116/155 (74.84%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            L+E +++ LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K+RYP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:   30 LTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIRYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP12_YEAST (Serine/threonine-protein phosphatase PP1-2 OS=Saccharomyces cerevisiae GN=GLC7 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 78/150 (52.00%), Postives = 113/150 (75.33%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSP 677
            L E +++ LC KA+ I +++  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   ILRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+++ +IFC+HGGLSP
Sbjct:   29 LEENEIRYLCSKARSIFIKQPILLELEAPIKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFILRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIIDEKIFCMHGGLSP 177          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PPIG_XENTR (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Xenopus tropicalis GN=ppp1cc PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 86/197 (43.65%), Postives = 126/197 (63.96%), Query Frame = 3
Query:  102 NPDTVIPIRFRIRESKMGANXXXXXXXXXXXEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            N D++I     +R SK G N                      L E +++ LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:    8 NIDSIIQRLLEVRGSKPGKNVQ--------------------LQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1G_RAT (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Rattus norvegicus GN=Ppp1cc PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 86/197 (43.65%), Postives = 126/197 (63.96%), Query Frame = 3
Query:  102 NPDTVIPIRFRIRESKMGANXXXXXXXXXXXEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            N D++I     +R SK G N                      L E +++ LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:    8 NIDSIIQRLLEVRGSKPGKNVQ--------------------LQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1G_MOUSE (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Mus musculus GN=Ppp1cc PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 86/197 (43.65%), Postives = 126/197 (63.96%), Query Frame = 3
Query:  102 NPDTVIPIRFRIRESKMGANXXXXXXXXXXXEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            N D++I     +R SK G N                      L E +++ LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:    8 NIDSIIQRLLEVRGSKPGKNVQ--------------------LQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1G_HUMAN (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Homo sapiens GN=PPP1CC PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 86/197 (43.65%), Postives = 126/197 (63.96%), Query Frame = 3
Query:  102 NPDTVIPIRFRIRESKMGANXXXXXXXXXXXEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            N D++I     +R SK G N                      L E +++ LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:    8 NIDSIIQRLLEVRGSKPGKNVQ--------------------LQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1G_BOVIN (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Bos taurus GN=PPP1CC PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 86/197 (43.65%), Postives = 126/197 (63.96%), Query Frame = 3
Query:  102 NPDTVIPIRFRIRESKMGANXXXXXXXXXXXEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            N D++I     +R SK G N                      L E +++ LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:    8 NIDSIIQRLLEVRGSKPGKNVQ--------------------LQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1GB_XENLA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit B OS=Xenopus laevis GN=ppp1cc-B PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 86/197 (43.65%), Postives = 126/197 (63.96%), Query Frame = 3
Query:  102 NPDTVIPIRFRIRESKMGANXXXXXXXXXXXEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            N D++I     +R SK G N                      L E +++ LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:    8 NIDSIIQRLLEVRGSKPGKNVQ--------------------LQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1GA_XENLA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit A OS=Xenopus laevis GN=ppp1cc-A PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 86/197 (43.65%), Postives = 126/197 (63.96%), Query Frame = 3
Query:  102 NPDTVIPIRFRIRESKMGANXXXXXXXXXXXEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            N D++I     +R SK G N                      L E +++ LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:    8 NIDSIIQRLLEVRGSKPGKNVQ--------------------LQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1A_CANFA (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Canis familiaris GN=PPP1CA PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 78/155 (50.32%), Postives = 116/155 (74.84%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            L+E +++ LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:   30 LTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDXFNXLPIAAIVDEKIFCCHGGLSPDLQSM 183          
The following BLAST results are available for this feature:
BLAST of FC875307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP1A_MOUSE8.019e-4650.97Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP12_YEAST1.047e-4552.00Serine/threonine-protein phosphatase PP1-2 OS=Sacc... [more]
PPIG_XENTR1.368e-4543.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_RAT1.368e-4543.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_MOUSE1.368e-4543.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_HUMAN1.368e-4543.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_BOVIN1.368e-4543.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1GB_XENLA1.368e-4543.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1GA_XENLA1.368e-4543.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1A_CANFA1.368e-4550.32Serine/threonine-protein phosphatase PP1-alpha cat... [more]

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Properties
Property NameValue
Genbank descriptionC31402E05EF CTVClemen1 Citrus clementina cDNA clone C31402E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875307 ID=FC875307; Name=FC875307; organism=Citrus clementina; type=EST; length=698bp
GACGCGCGCTCTCATTTCGACTTCGTCGGCTCCGCTACACAAGACTGAAG
AATCACACAAACGAAACTCTCTGATCTCACTCTAGGGTTAGGGATATCCC
TAATCCGGACACCGTTATCCCGATTCGGTTTAGGATTCGAGAATCAAAGA
TGGGCGCAAATTCGTTATCCACTGACACGACCACCGACCTCGACGAGCAG
ATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAACCACAGGTTAAAGC
ATTATGCGAGAAGGCTAAGGAGATATTGATGGAAGAAAGCAATGTACAGC
CTGTGAAAAGTCCAGTGACAATTTGTGGCGATATTCATGGGCAGTTTCAT
GATCTTGCAGAACTTTTTCAAATTGGCGGGAAGTGTCCAGATACCAATTA
CTTGTTTATGGGAGATTATGTGGACCGTGGGTATTATTCTGTTGAAACAG
TTACGCTCTTAGTGGCCTTGAAGGTGCGGTATCCTCAGCGGATCACTATT
CTTAGAGGAAACCATGAGAGTCGTCAGATTACTCAAGTTTATGGATTCTA
TGATGAATGTCTACGGAAGTATGGCAATGCTAACATTTGGAAGATTTTTA
CTGACCTTTTTGACTACTTTCCGTTGACTGCCTTGGTAGAGTCAGAAATA
TTCTGTCTGCATGGTGGGCTGTCCCCCTTCATTGAACACTTGATATAT
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