FC875307

Overview
NameFC875307
Unique NameFC875307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1A_RAT (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Rattus norvegicus GN=Ppp1ca PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.787e-45
Identity = 78/155 (50.32%), Postives = 116/155 (74.84%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            L+E +++ LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:   30 LTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1A_RABIT (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Oryctolagus cuniculus GN=PPP1CA PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.787e-45
Identity = 78/155 (50.32%), Postives = 116/155 (74.84%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            L+E +++ LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:   30 LTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1A_HUMAN (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.787e-45
Identity = 78/155 (50.32%), Postives = 116/155 (74.84%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            L+E +++ LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:   30 LTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1A_BOVIN (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Bos taurus GN=PPP1CA PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.787e-45
Identity = 78/155 (50.32%), Postives = 116/155 (74.84%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            L+E +++ LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:   30 LTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1G_CANFA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Canis familiaris GN=PPP1CC PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.333e-45
Identity = 86/197 (43.65%), Postives = 126/197 (63.96%), Query Frame = 3
Query:  102 NPDTVIPIRFRIRESKMGANXXXXXXXXXXXEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            N D++I     +R SK G N                      L E +++ LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:    8 NIDSIIQRLLEVRGSKPGKNVQ--------------------LQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECVSINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP17_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 7 OS=Arabidopsis thaliana GN=TOPP7 PE=2 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 2.333e-45
Identity = 79/150 (52.67%), Postives = 114/150 (76.00%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSP 677
            LSE ++K LC  +++I + + N+  +++PV ICGDIHGQ+ DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K+++P+   +LRGNHES  I ++YGFYDEC R++ +  IW+IFTD F+  P+ AL++  IFC+HGGLSP
Sbjct:   26 LSETEIKQLCFVSRDIFLRQPNLLELEAPVKICGDIHGQYPDLLRLFEHGGYPPNSNYLFLGDYVDRGKQSLETICLLLAYKIKFPENFFLLRGNHESASINRIYGFYDECKRRF-SVKIWRIFTDCFNCLPVAALIDERIFCMHGGLSP 174          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1B_XENTR (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Xenopus tropicalis GN=ppp1cb PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.198e-45
Identity = 82/172 (47.67%), Postives = 123/172 (71.51%), Query Frame = 3
Query:  201 ISQLMQ---CKP-----LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            IS+L++   C+P     ++E +V+ LC K++EI + +  +  +++P+ ICGDIHGQ+ DL  LF+ GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R++ N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:   12 ISRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRF-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 182          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1B_XENLA (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Xenopus laevis GN=ppp1cb PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.198e-45
Identity = 82/172 (47.67%), Postives = 123/172 (71.51%), Query Frame = 3
Query:  201 ISQLMQ---CKP-----LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            IS+L++   C+P     ++E +V+ LC K++EI + +  +  +++P+ ICGDIHGQ+ DL  LF+ GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R++ N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:   12 ISRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRF-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 182          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1B_RAT (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Rattus norvegicus GN=Ppp1cb PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 8.866e-45
Identity = 79/170 (46.47%), Postives = 121/170 (71.18%), Query Frame = 3
Query:  198 QISQLMQCKP-----LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            ++ ++  C+P     ++E +V+ LC K++EI + +  +  +++P+ ICGDIHGQ+ DL  LF+ GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R++ N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:   14 RLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRF-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 182          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1B_RABIT (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Oryctolagus cuniculus GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 8.866e-45
Identity = 79/170 (46.47%), Postives = 121/170 (71.18%), Query Frame = 3
Query:  198 QISQLMQCKP-----LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            ++ ++  C+P     ++E +V+ LC K++EI + +  +  +++P+ ICGDIHGQ+ DL  LF+ GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R++ N  +WK FTD F+  P+ A+V+ +IFC HGGLSP ++ +
Sbjct:   14 RLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRF-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSM 182          
The following BLAST results are available for this feature:
BLAST of FC875307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP1A_RAT1.787e-4550.32Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_RABIT1.787e-4550.32Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_HUMAN1.787e-4550.32Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_BOVIN1.787e-4550.32Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1G_CANFA2.333e-4543.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP17_ARATH2.333e-4552.67Serine/threonine-protein phosphatase PP1 isozyme 7... [more]
PP1B_XENTR5.198e-4547.67Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_XENLA5.198e-4547.67Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_RAT8.866e-4546.47Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_RABIT8.866e-4546.47Serine/threonine-protein phosphatase PP1-beta cata... [more]

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Properties
Property NameValue
Genbank descriptionC31402E05EF CTVClemen1 Citrus clementina cDNA clone C31402E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875307 ID=FC875307; Name=FC875307; organism=Citrus clementina; type=EST; length=698bp
GACGCGCGCTCTCATTTCGACTTCGTCGGCTCCGCTACACAAGACTGAAG
AATCACACAAACGAAACTCTCTGATCTCACTCTAGGGTTAGGGATATCCC
TAATCCGGACACCGTTATCCCGATTCGGTTTAGGATTCGAGAATCAAAGA
TGGGCGCAAATTCGTTATCCACTGACACGACCACCGACCTCGACGAGCAG
ATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAACCACAGGTTAAAGC
ATTATGCGAGAAGGCTAAGGAGATATTGATGGAAGAAAGCAATGTACAGC
CTGTGAAAAGTCCAGTGACAATTTGTGGCGATATTCATGGGCAGTTTCAT
GATCTTGCAGAACTTTTTCAAATTGGCGGGAAGTGTCCAGATACCAATTA
CTTGTTTATGGGAGATTATGTGGACCGTGGGTATTATTCTGTTGAAACAG
TTACGCTCTTAGTGGCCTTGAAGGTGCGGTATCCTCAGCGGATCACTATT
CTTAGAGGAAACCATGAGAGTCGTCAGATTACTCAAGTTTATGGATTCTA
TGATGAATGTCTACGGAAGTATGGCAATGCTAACATTTGGAAGATTTTTA
CTGACCTTTTTGACTACTTTCCGTTGACTGCCTTGGTAGAGTCAGAAATA
TTCTGTCTGCATGGTGGGCTGTCCCCCTTCATTGAACACTTGATATAT
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