FC875307

Overview
NameFC875307
Unique NameFC875307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP13_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Nicotiana tabacum GN=NPP3 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.865e-43
Identity = 76/155 (49.03%), Postives = 111/155 (71.61%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            LSE ++K LC  +++I +++ N+   ++P+   GDIHGQ+ DL  LF+ GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R++ N  +WK FTD F+  P+ AL++ +I C+HGGLSP +  L
Sbjct:   27 LSESEIKQLCVASRDIFLKQPNLLESEAPIKTRGDIHGQYSDLLRLFEYGGFPPEANYLFLGDYVDRGRQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRF-NVKLWKSFTDCFNCLPVAALIDEKILCMHGGLSPDLSSL 180          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP12_SCHPO (Serine/threonine-protein phosphatase PP1-2 OS=Schizosaccharomyces pombe GN=sds21 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.865e-43
Identity = 75/155 (48.39%), Postives = 110/155 (70.97%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            LS+ +++ LC  ++ I + +  +  +++P+ ICGDIHGQ+ DL  LF+ GG  PD NYLF+GDYVDRG  S+E + LL A K++YP+   +LRGNHE   I ++YGFYDEC R+Y +  +WK FTD F+  P+ A+++ +IFC+HGGLSP +  L
Sbjct:   26 LSDAEIRYLCTTSRSIFLSQPMLLELEAPLKICGDIHGQYSDLLRLFEYGGYPPDANYLFLGDYVDRGKQSLEVICLLFAYKIKYPENFFLLRGNHEFASINRIYGFYDECKRRY-SIKLWKTFTDCFNCMPVAAVIDEKIFCMHGGLSPDLNSL 179          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP15_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 5 OS=Arabidopsis thaliana GN=TOPP5 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.354e-43
Identity = 74/150 (49.33%), Postives = 110/150 (73.33%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSP 677
            L++ +++ LC  ++EI +++  +  + +PV ICGDIHGQ+ DL  LF+ GG  P  NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R++ N  +WK+FTD F+  P+ A+++ +I C+HGGLSP
Sbjct:   36 LNDSEIRQLCFVSREIFLQQPCLLELAAPVKICGDIHGQYSDLLRLFEYGGFPPAANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRF-NVKLWKVFTDTFNCLPVAAVIDEKILCMHGGLSP 184          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP12_TRYBB (Serine/threonine-protein phosphatase PP1(5.9) OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.260e-40
Identity = 74/155 (47.74%), Postives = 107/155 (69.03%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            L+E +V+ L  +++ + M +  +  + +PV ICGD+HGQ+ DL  LF +GG  PD NY+F+GDYVDRG  S+ET+ LL+A K+ +P+   +LRGNHE   I ++YGF+DEC R+Y +  +WK FTD F+  P+  LVE  I C+HGGLSP +  L
Sbjct:   68 LTEAEVRWLVMESRALFMSQPMLVEIAAPVRICGDVHGQYTDLLRLFDLGGFPPDANYIFLGDYVDRGDQSLETICLLLAYKLSFPETFFLLRGNHECSSINRIYGFFDECKRRY-SVRLWKQFTDTFNCMPVAGLVEGRILCMHGGLSPELTDL 221          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PPZ_SCHPO (Serine/threonine-protein phosphatase PP-Z OS=Schizosaccharomyces pombe GN=pzh1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.588e-40
Identity = 73/155 (47.10%), Postives = 104/155 (67.10%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            L   ++ ++C   +EI + +  +  +  PV I GD+HGQ+ DL  LF++ G  P +NYLF+GDYVDRG  S+ET+ LL   K+RYP+   +LRGNHE   IT+VYGFYDEC R+  N  IWK F + F+  P+ ++V  +IFC+HGGLSP + H+
Sbjct:  214 LKNAEITSICMAVREIFLSQPTLLELTPPVKIVGDVHGQYSDLIRLFEMCGFPPSSNYLFLGDYVDRGKQSLETILLLFLYKIRYPENFFLLRGNHECANITRVYGFYDECKRRC-NIKIWKTFINTFNCLPIASVVAGKIFCVHGGLSPSLSHM 367          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PPZ1_YEAST (Serine/threonine-protein phosphatase PP-Z1 OS=Saccharomyces cerevisiae GN=PPZ1 PE=1 SV=4)

HSP 1 Score: 163.31 bits (412), Expect = 1.122e-39
Identity = 75/155 (48.39%), Postives = 103/155 (66.45%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            L   ++  +C KA+EI + + ++  +  PV I GD+HGQ+ DL  LF   G  P +NYLF+GDYVDRG  S+ET+ LL   K++YP+   +LRGNHE   +T+VYGFYDEC R+  N  IWK F D F+  PL A+V  +IFC+HGGLSP +  +
Sbjct:  385 LKNNEILQICIKAREIFLSQPSLLELSPPVKIVGDVHGQYGDLLRLFTKCGFPPSSNYLFLGDYVDRGKQSLETILLLFCYKIKYPENFFLLRGNHECANVTRVYGFYDECKRRC-NIKIWKTFIDTFNTLPLAAIVAGKIFCVHGGLSPVLNSM 538          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PPQ1_YEAST (Serine/threonine-protein phosphatase PPQ OS=Saccharomyces cerevisiae GN=PPQ1 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.122e-39
Identity = 67/151 (44.37%), Postives = 108/151 (71.52%), Query Frame = 3
Query:  225 PLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSP 677
            P    +++ +C  A+EI + +  +  +++P+ + GD+HGQF+DL  + ++ G   DTNYLF+GDYVDRG  S+ET+ LL+  K++Y     +LRGNHES  +T++YGFYDEC R+  ++ +WK+F D+F+  PL A+++ +IFC+HGG+SP
Sbjct:  266 PFHSWEIQLICYHAREIFLNQPTLLRLQAPIKVVGDVHGQFNDLLRILKLSGVPSDTNYLFLGDYVDRGKNSLETILLLLCYKIKYKDNFFMLRGNHESANVTKMYGFYDECKRRL-SSKVWKMFVDVFNTLPLAAIIQDKIFCVHGGISP 415          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP11_TRYBB (Serine/threonine-protein phosphatase PP1(4.8) OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.122e-39
Identity = 73/155 (47.10%), Postives = 106/155 (68.39%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            L+E +V+ L  +++ + M +  +  + +PV ICGD+HGQ+ DL  LF +GG  PD NY+F+GDYVDRG  S+E + LL+A K+ +P+   +LRGNHE   I ++YGF+DEC R+Y +  +WK FTD F+  P+  LVE  I C+HGGLSP +  L
Sbjct:   68 LTEAEVRWLVMESRALFMSQPMLVEIAAPVRICGDVHGQYTDLLRLFDLGGFPPDANYIFLGDYVDRGDQSLERICLLLAYKLSFPETFFLLRGNHECSSINRIYGFFDECKRRY-SVRLWKQFTDTFNCMPVAGLVEGRILCMHGGLSPELTDL 221          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PPY_DROME (Serine/threonine-protein phosphatase PP-Y OS=Drosophila melanogaster GN=PpY-55A PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.270e-39
Identity = 75/155 (48.39%), Postives = 104/155 (67.10%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            L E  ++ L ++ +E++  +  +  +++PV ICGDIHGQF DL  +F+  G  P  NYLF+GDYVDRG  S+ET+ LL A KV+YP    +LRGNHES  I ++YGFYDE  R++    +W  FTD F++ P+ ALV   IFC HGGLSP + +L
Sbjct:   26 LKEELIERLIQQTREVIKWQPMLLELQAPVNICGDIHGQFTDLLRIFKACGFPPKANYLFLGDYVDRGKQSLETICLLFAYKVKYPLNFFLLRGNHESASINKIYGFYDEIKRRH-TVRLWHSFTDCFNWLPVAALVGERIFCCHGGLSPSLRNL 179          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1_BRANA (Serine/threonine-protein phosphatase PP1 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.240e-38
Identity = 69/122 (56.56%), Postives = 94/122 (77.05%), Query Frame = 3
Query:  327 GDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            GDIHGQ+ DL  LF+ GG  P  N+LF+GDYVDRG  S+ET+ LL+A K+RYP +I +LRGNHE  +I ++YGFYDEC R++ N  +WKIFTD F+  P+ AL++ +I C+HGGLSP +++L
Sbjct:    1 GDIHGQYQDLLRLFEYGGYPPSANFLFLGDYVDRGKQSLETICLLLAYKIRYPSKIYLLRGNHEDAKINRIYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDDKILCMHGGLSPELDNL 121          
The following BLAST results are available for this feature:
BLAST of FC875307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP13_TOBAC4.865e-4349.03Serine/threonine-protein phosphatase PP1 isozyme 3... [more]
PP12_SCHPO4.865e-4348.39Serine/threonine-protein phosphatase PP1-2 OS=Schi... [more]
PP15_ARATH6.354e-4349.33Serine/threonine-protein phosphatase PP1 isozyme 5... [more]
PP12_TRYBB2.260e-4047.74Serine/threonine-protein phosphatase PP1(5.9) OS=T... [more]
PPZ_SCHPO8.588e-4047.10Serine/threonine-protein phosphatase PP-Z OS=Schiz... [more]
PPZ1_YEAST1.122e-3948.39Serine/threonine-protein phosphatase PP-Z1 OS=Sacc... [more]
PPQ1_YEAST1.122e-3944.37Serine/threonine-protein phosphatase PPQ OS=Saccha... [more]
PP11_TRYBB1.122e-3947.10Serine/threonine-protein phosphatase PP1(4.8) OS=T... [more]
PPY_DROME7.270e-3948.39Serine/threonine-protein phosphatase PP-Y OS=Droso... [more]
PP1_BRANA1.240e-3856.56Serine/threonine-protein phosphatase PP1 (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC31402E05EF CTVClemen1 Citrus clementina cDNA clone C31402E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875307 ID=FC875307; Name=FC875307; organism=Citrus clementina; type=EST; length=698bp
GACGCGCGCTCTCATTTCGACTTCGTCGGCTCCGCTACACAAGACTGAAG
AATCACACAAACGAAACTCTCTGATCTCACTCTAGGGTTAGGGATATCCC
TAATCCGGACACCGTTATCCCGATTCGGTTTAGGATTCGAGAATCAAAGA
TGGGCGCAAATTCGTTATCCACTGACACGACCACCGACCTCGACGAGCAG
ATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAACCACAGGTTAAAGC
ATTATGCGAGAAGGCTAAGGAGATATTGATGGAAGAAAGCAATGTACAGC
CTGTGAAAAGTCCAGTGACAATTTGTGGCGATATTCATGGGCAGTTTCAT
GATCTTGCAGAACTTTTTCAAATTGGCGGGAAGTGTCCAGATACCAATTA
CTTGTTTATGGGAGATTATGTGGACCGTGGGTATTATTCTGTTGAAACAG
TTACGCTCTTAGTGGCCTTGAAGGTGCGGTATCCTCAGCGGATCACTATT
CTTAGAGGAAACCATGAGAGTCGTCAGATTACTCAAGTTTATGGATTCTA
TGATGAATGTCTACGGAAGTATGGCAATGCTAACATTTGGAAGATTTTTA
CTGACCTTTTTGACTACTTTCCGTTGACTGCCTTGGTAGAGTCAGAAATA
TTCTGTCTGCATGGTGGGCTGTCCCCCTTCATTGAACACTTGATATAT
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