FC875307

Overview
NameFC875307
Unique NameFC875307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PPE2_HUMAN (Serine/threonine-protein phosphatase with EF-hands 2 OS=Homo sapiens GN=PPEF2 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 54/148 (36.49%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  252 LCEKAKEILMEESNVQPVKS----PVTICGDIHGQFHDLAELFQIGG-KCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKY--GNANIWKIFTDLFDYFPLTALVESEIFCLHGGLS 674
            L  + K+ L++  N+  V +     +T+CGD+HGQ  DL  +F   G   P+ +Y+F GD+VDRG  SVE + +L A  + YP+   + RGNHE   +   YGF  E + KY      I +   D+F + PL  L++ ++  LHGG+S
Sbjct:  149 LLYETKKHLVQLPNINRVSTCYSEEITVCGDLHGQLDDLIFIFYKNGLPSPERSYVFNGDFVDRGKDSVEILMILFAFMLVYPKEFHLNRGNHEDHMVNLRYGFTKEVMNKYKVHGKEILRTLQDVFCWLPLATLIDEKVLILHGGVS 296          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PPE2_MOUSE (Serine/threonine-protein phosphatase with EF-hands 2 OS=Mus musculus GN=Ppef2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  315 VTICGDIHGQFHDLAELFQIGG-KCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKY--GNANIWKIFTDLFDYFPLTALVESEIFCLHGGLS 674
            VT+CGD+HGQ  DL  +F   G   P+  Y+F GD+VDRG  SVE + +L A  + YP+   + RGNHE   +   YGF  E + KY      I +   D+F + PL  LV+ ++  LHGG+S
Sbjct:  174 VTVCGDLHGQLDDLIFIFYKNGLPSPERAYVFNGDFVDRGKDSVEVLMVLFAFMLVYPKEFHLNRGNHEDHLVNLRYGFTKEVMHKYKIHGKKILRTLQDVFCWLPLATLVDEKVLVLHGGVS 296          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PPE1_MOUSE (Serine/threonine-protein phosphatase with EF-hands 1 OS=Mus musculus GN=Ppef1 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 50/145 (34.48%), Postives = 85/145 (58.62%), Query Frame = 3
Query:  261 KAKEILMEESNVQPVKS----PVTICGDIHGQFHDLAELFQIGGKCPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKY--GNANIWKIFTDLFDYFPLTALVESEIFCLHGGLS 674
            +A+++L +  N   VK+     +TICGD+HG+  DL  +F   G   + N Y+F GD+VDRG  S+E + +L+   + YP  + + RGNHE   +   YGF  E L+KY      I ++  +++ + P+  ++++EI  +HGG+S
Sbjct:  148 EARKVLKQMPNFSHVKTFPAKEITICGDLHGKLDDLMLIFYKNGLPSENNPYVFNGDFVDRGNNSMEILMILLVCFLVYPSDLHLNRGNHEDFMMNLRYGFTKEILQKYKLHGRKILQVLEEVYTWLPIGTIIDNEILVIHGGIS 292          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PPE1_RAT (Serine/threonine-protein phosphatase with EF-hands 1 OS=Rattus norvegicus GN=Ppef1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 50/145 (34.48%), Postives = 85/145 (58.62%), Query Frame = 3
Query:  261 KAKEILMEESNVQPVKS----PVTICGDIHGQFHDLAELFQIGGKCPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKY--GNANIWKIFTDLFDYFPLTALVESEIFCLHGGLS 674
            +A++IL +  N   +++     +TICGD+HG+  DL  +F   G   + N Y+F GD+VDRG  S+E + +L+   + YP  + + RGNHE   +   YGF  E L+KY      I ++  +L+ + P+  ++++EI  +HGG+S
Sbjct:  146 EARKILKQMPNFTRIQTFPAKEITICGDLHGKLDDLMLIFYKNGLPSEKNPYVFNGDFVDRGNNSMEILMILLVSFLVYPTDLHLNRGNHEDFMMNLRYGFTKEILQKYKLHGKKILQVLEELYTWLPIGTIIDNEILVIHGGIS 290          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PPE1_HUMAN (Serine/threonine-protein phosphatase with EF-hands 1 OS=Homo sapiens GN=PPEF1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 51/145 (35.17%), Postives = 81/145 (55.86%), Query Frame = 3
Query:  261 KAKEILMEESNVQPVKSP----VTICGDIHGQFHDLAELFQIGGKCPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKY--GNANIWKIFTDLFDYFPLTALVESEIFCLHGGLS 674
            + K++L +  N   +++     VTICGD+HG+  DL  +F   G   + N Y+F GD+VDRG  S+E + +L    + YP  + + RGNHE   +   YGF  E L KY      I +I  + + + P+  +V++EI  +HGG+S
Sbjct:  145 ETKKVLKQMPNFTHIQTSPSKEVTICGDLHGKLDDLFLIFYKNGLPSERNPYVFNGDFVDRGKNSIEILMILCVSFLVYPNDLHLNRGNHEDFMMNLRYGFTKEILHKYKLHGKRILQILEEFYAWLPIGTIVDNEILVIHGGIS 289          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: RDGC_DROME (Serine/threonine-protein phosphatase rdgC OS=Drosophila melanogaster GN=rdgC PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 3
Query:  243 VKALCEKAKEILMEESNVQPVKSPV----TICGDIHGQFHDLAELFQIGGKCPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKY--GNANIWKIFTDLFDYFPLTALVESEIFCLHGGLS 674
            V  +  +A + L +  N+ PV + V    T+CGD+HG+  DL  +    G    +N Y+F GD+VDRG   +E + LL++L + +P  + + RGNHE   +   YGF  E   KY   +  I     +++ + PL +++ S +  +HGG S
Sbjct:  125 VALILREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDDLLVVLHKNGLPSSSNPYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYGFIREVESKYPRNHKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFS 275          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PPP7I_ARATH (Serine/threonine-protein phosphatase 7 inactive homolog OS=Arabidopsis thaliana GN=At5g10900 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 47/150 (31.33%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  249 ALCEKAKEILMEESNVQPVK-----SPVTICGDIHGQFHDLAELFQIGGKCPDTN--YLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNAN--IWKIFTDLFDYFPLTALVESEIFCLHGGL 671
            +L + A +IL +E+N   +      S V + GD+HGQ HDL ++F   G+ P  N  ++F G+Y+ RG +S+E   +L+A K+  P+ + +LRG+ E+R   +   F  +   +YG     ++    D F   PL +++ + ++  HGGL
Sbjct:  198 SLVDCASQILEKEANCVKINGCSEDSRVIVVGDLHGQLHDLLKIFDQSGR-PSQNQCFVFNGNYIGRGSWSLEVFLVLLAWKIMMPENVILLRGSSETRVSAEELDFLKDICDRYGEHGPMLYSKCIDCFKMLPLASVISNSVYTTHGGL 346          
The following BLAST results are available for this feature:
BLAST of FC875307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PPE2_HUMAN4.008e-2136.49Serine/threonine-protein phosphatase with EF-hands... [more]
PPE2_MOUSE2.598e-2041.46Serine/threonine-protein phosphatase with EF-hands... [more]
PPE1_MOUSE2.199e-1934.48Serine/threonine-protein phosphatase with EF-hands... [more]
PPE1_RAT8.357e-1934.48Serine/threonine-protein phosphatase with EF-hands... [more]
PPE1_HUMAN3.176e-1835.17Serine/threonine-protein phosphatase with EF-hands... [more]
RDGC_DROME2.058e-1732.45Serine/threonine-protein phosphatase rdgC OS=Droso... [more]
PPP7I_ARATH1.334e-1631.33Serine/threonine-protein phosphatase 7 inactive ho... [more]

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Properties
Property NameValue
Genbank descriptionC31402E05EF CTVClemen1 Citrus clementina cDNA clone C31402E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875307 ID=FC875307; Name=FC875307; organism=Citrus clementina; type=EST; length=698bp
GACGCGCGCTCTCATTTCGACTTCGTCGGCTCCGCTACACAAGACTGAAG
AATCACACAAACGAAACTCTCTGATCTCACTCTAGGGTTAGGGATATCCC
TAATCCGGACACCGTTATCCCGATTCGGTTTAGGATTCGAGAATCAAAGA
TGGGCGCAAATTCGTTATCCACTGACACGACCACCGACCTCGACGAGCAG
ATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAACCACAGGTTAAAGC
ATTATGCGAGAAGGCTAAGGAGATATTGATGGAAGAAAGCAATGTACAGC
CTGTGAAAAGTCCAGTGACAATTTGTGGCGATATTCATGGGCAGTTTCAT
GATCTTGCAGAACTTTTTCAAATTGGCGGGAAGTGTCCAGATACCAATTA
CTTGTTTATGGGAGATTATGTGGACCGTGGGTATTATTCTGTTGAAACAG
TTACGCTCTTAGTGGCCTTGAAGGTGCGGTATCCTCAGCGGATCACTATT
CTTAGAGGAAACCATGAGAGTCGTCAGATTACTCAAGTTTATGGATTCTA
TGATGAATGTCTACGGAAGTATGGCAATGCTAACATTTGGAAGATTTTTA
CTGACCTTTTTGACTACTTTCCGTTGACTGCCTTGGTAGAGTCAGAAATA
TTCTGTCTGCATGGTGGGCTGTCCCCCTTCATTGAACACTTGATATAT
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