FC875307

Overview
NameFC875307
Unique NameFC875307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PPH6_CAEEL (Putative serine/threonine-protein phosphatase pph-6 OS=Caenorhabditis elegans GN=pph-6 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 7.488e-52
Identity = 95/161 (59.01%), Postives = 119/161 (73.91%), Query Frame = 3
Query:  201 ISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFI 683
            I+   +CK L E    ALC    + L  E+NV PV SPVTICGDIHGQF+DL ELF+ GG  P+T Y+FMGDYVDRG+YS+ETVTLL  L ++YP +IT+LRGNHESR+I+ VYGFYDEC  KYG+ N+ K F  +FD  P+ AL++  + C+HGGLSP I
Sbjct:   36 ITWASECKYLPESDAVALCATLIDRLSLEANVVPVSSPVTICGDIHGQFYDLLELFKTGGTVPNTKYVFMGDYVDRGHYSLETVTLLFCLLLKYPNQITLLRGNHESRRISNVYGFYDECQNKYGHGNVHKWFCKVFDVLPIGALIDESVLCVHGGLSPDI 196          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP4C_KLULA (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Kluyveromyces lactis GN=PPH3 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.780e-52
Identity = 92/161 (57.14%), Postives = 120/161 (74.53%), Query Frame = 3
Query:  195 EQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSP 677
            E I  L Q K + E  + +LC  A+E+LM ESNV  V +PVTICGDIHGQ HDL  LF   G      Y+F+GD+VDRG+YS+E+  LLV  K+RYP RI ++RGNHE+RQIT+VYGFYDE +RKYGN+N+W+   ++FDY PL A+V +++FC+HGGLSP
Sbjct:    6 EIIETLRQGKHVDEDSIYSLCVMAQELLMNESNVTHVDTPVTICGDIHGQLHDLLTLFAKSGGIEKNRYIFLGDFVDRGFYSLESFLLLVCYKLRYPDRIVLIRGNHETRQITKVYGFYDEVVRKYGNSNVWRYCCEVFDYLPLGAIVNNKVFCVHGGLSP 166          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP4C_CANGA (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Candida glabrata GN=PPH3 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.339e-51
Identity = 92/166 (55.42%), Postives = 122/166 (73.49%), Query Frame = 3
Query:  195 EQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            E +  L + + + E  V ALC  ++E+LM ESNV  V +PVTICGDIHGQ HDL  LF+  G    T Y+F+GD+VDRG+YS+E+  LL+  K+RYP RIT++RGNHE+RQIT+VYGFYDE +RKYGN+N+W+   ++FDY  L A++   IFC+HGGLSP I  L
Sbjct:    7 EILVSLKEGRHIPEETVYALCMDSQELLMNESNVARVDTPVTICGDIHGQLHDLLTLFEKSGGVEKTRYVFLGDFVDRGFYSLESFLLLLVYKLRYPDRITLIRGNHETRQITKVYGFYDEVMRKYGNSNVWRYCCEVFDYLSLGAIINDSIFCVHGGLSPDITTL 172          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP4C_YEAST (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Saccharomyces cerevisiae GN=PPH3 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.146e-50
Identity = 89/159 (55.97%), Postives = 118/159 (74.21%), Query Frame = 3
Query:  201 ISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSP 677
            I+ L   K + E  V  LC  ++E+LM E NV  V +PVTICGDIHGQ HDL  LF+  G    T Y+F+GD+VDRG+YS+E+  LL+  K+RYP RIT++RGNHE+RQIT+VYGFYDE +RKYGN+N+W+   ++FDY  L A++ + IFC+HGGLSP
Sbjct:    8 IASLRDGKHIPEETVFRLCLNSQELLMNEGNVTQVDTPVTICGDIHGQLHDLLTLFEKSGGVEKTRYIFLGDFVDRGFYSLESFLLLLCYKLRYPDRITLIRGNHETRQITKVYGFYDEVVRKYGNSNVWRYCCEVFDYLSLGAIINNSIFCVHGGLSP 166          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP4C_ASHGO (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Ashbya gossypii GN=PPH3 PE=3 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 5.933e-49
Identity = 87/161 (54.04%), Postives = 117/161 (72.67%), Query Frame = 3
Query:  195 EQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSP 677
            E I  L   K + E  +  LC K +E+L+ ESNV  V +PVTICGDIHGQ HDL  LF+         ++F+GD+VDRG+YS+E+  LL+  K+RYP RIT++RGNHE+RQIT+VYGFYDE +RKYGN+N+W+   ++FDY  L A++  +IFC+HGGLSP
Sbjct:    8 EIIEYLRYSKHIPEETIYELCLKCQELLVNESNVTHVDTPVTICGDIHGQLHDLLTLFEKSEGIEKNRFIFLGDFVDRGFYSLESFLLLLCYKLRYPDRITLIRGNHETRQITKVYGFYDEVIRKYGNSNVWRYCCEVFDYLSLGAIINGQIFCVHGGLSP 168          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP19_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 9 OS=Arabidopsis thaliana GN=TOPP9 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.461e-47
Identity = 82/155 (52.90%), Postives = 116/155 (74.84%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            LSE +++ LC  A++I + + N+  + +P+ ICGDIHGQ+ DL  LF+ GG  P  NYLF+GDYVDRG  S+ET+ LL+A K+RYP +I +LRGNHE  +I ++YGFYDEC R++ N  +WKIFTD F+  P+ AL++ +I C+HGGLSP +E+L
Sbjct:   32 LSEVEIRQLCVNARQIFLSQPNLLELHAPIRICGDIHGQYQDLLRLFEYGGYPPSANYLFLGDYVDRGKQSLETICLLLAYKIRYPSKIFLLRGNHEDAKINRIYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDEKILCMHGGLSPELENL 185          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP14_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 4 OS=Arabidopsis thaliana GN=TOPP4 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.256e-47
Identity = 80/155 (51.61%), Postives = 115/155 (74.19%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            LSE ++K LC  A++I +++ N+  +++P+ ICGDIHGQ+ DL  LF+ GG  P  NYLF+GDYVDRG  S+ET+ LL+A K++YP    +LRGNHE   I ++YGFYDEC R++ N  +WK+FTD F+  P+ AL++ +I C+HGGLSP ++HL
Sbjct:   40 LSEAEIKQLCTTARDIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPSANYLFLGDYVDRGKQSLETICLLLAYKIKYPGNFFLLRGNHECASINRIYGFYDECKRRF-NVRVWKVFTDCFNCLPVAALIDDKILCMHGGLSPDLDHL 193          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP18_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 8 OS=Arabidopsis thaliana GN=TOPP8 PE=2 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 4.252e-47
Identity = 80/155 (51.61%), Postives = 116/155 (74.84%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            LSE +++ LC  A++I + + N+  + +P+ ICGDIHGQ+ DL  LF+ GG  P  NYLF+GDYVDRG  S+ET+ LL+A K+RYP +I +LRGNHE  +I ++YGFYDEC R++ N  +WK+FTD F+  P+ AL++ +I C+HGGLSP +++L
Sbjct:   32 LSESEIRQLCFNARQIFLSQPNLLDLHAPIRICGDIHGQYQDLLRLFEYGGYPPSANYLFLGDYVDRGKQSLETICLLLAYKIRYPSKIYLLRGNHEDAKINRIYGFYDECKRRF-NVRLWKVFTDCFNCLPVAALIDEKILCMHGGLSPDLDNL 185          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1_ORYSJ (Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 9.473e-47
Identity = 79/155 (50.97%), Postives = 115/155 (74.19%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            LSE +++ LC  ++EI + + N+  +++P+ ICGDIHGQ+ DL  LF+ GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R++ N  +WK+FTD F+  P+ AL++ +I C+HGGLSP + HL
Sbjct:   41 LSESEIRQLCTVSREIFLSQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRF-NVRLWKVFTDCFNCLPVAALIDDKILCMHGGLSPDLTHL 194          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP11_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Arabidopsis thaliana GN=TOPP1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.473e-47
Identity = 80/155 (51.61%), Postives = 116/155 (74.84%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            LSE +++ LC  +KEI +++ N+  +++P+ ICGDIHGQ+ DL  LF+ GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHES  I ++YGFYDEC R++ N  +WKIFTD F+  P+ AL++  I C+HGG+SP ++ L
Sbjct:   43 LSEGEIRQLCAVSKEIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHESASINRIYGFYDECKRRF-NVRLWKIFTDCFNCLPVAALIDDRILCMHGGISPELKSL 196          
The following BLAST results are available for this feature:
BLAST of FC875307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PPH6_CAEEL7.488e-5259.01Putative serine/threonine-protein phosphatase pph-... [more]
PP4C_KLULA9.780e-5257.14Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_CANGA6.339e-5155.42Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_YEAST3.146e-5055.97Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_ASHGO5.933e-4954.04Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP19_ARATH1.461e-4752.90Serine/threonine-protein phosphatase PP1 isozyme 9... [more]
PP14_ARATH3.256e-4751.61Serine/threonine-protein phosphatase PP1 isozyme 4... [more]
PP18_ARATH4.252e-4751.61Serine/threonine-protein phosphatase PP1 isozyme 8... [more]
PP1_ORYSJ9.473e-4750.97Serine/threonine-protein phosphatase PP1 OS=Oryza ... [more]
PP11_ARATH9.473e-4751.61Serine/threonine-protein phosphatase PP1 isozyme 1... [more]

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Properties
Property NameValue
Genbank descriptionC31402E05EF CTVClemen1 Citrus clementina cDNA clone C31402E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875307 ID=FC875307; Name=FC875307; organism=Citrus clementina; type=EST; length=698bp
GACGCGCGCTCTCATTTCGACTTCGTCGGCTCCGCTACACAAGACTGAAG
AATCACACAAACGAAACTCTCTGATCTCACTCTAGGGTTAGGGATATCCC
TAATCCGGACACCGTTATCCCGATTCGGTTTAGGATTCGAGAATCAAAGA
TGGGCGCAAATTCGTTATCCACTGACACGACCACCGACCTCGACGAGCAG
ATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAACCACAGGTTAAAGC
ATTATGCGAGAAGGCTAAGGAGATATTGATGGAAGAAAGCAATGTACAGC
CTGTGAAAAGTCCAGTGACAATTTGTGGCGATATTCATGGGCAGTTTCAT
GATCTTGCAGAACTTTTTCAAATTGGCGGGAAGTGTCCAGATACCAATTA
CTTGTTTATGGGAGATTATGTGGACCGTGGGTATTATTCTGTTGAAACAG
TTACGCTCTTAGTGGCCTTGAAGGTGCGGTATCCTCAGCGGATCACTATT
CTTAGAGGAAACCATGAGAGTCGTCAGATTACTCAAGTTTATGGATTCTA
TGATGAATGTCTACGGAAGTATGGCAATGCTAACATTTGGAAGATTTTTA
CTGACCTTTTTGACTACTTTCCGTTGACTGCCTTGGTAGAGTCAGAAATA
TTCTGTCTGCATGGTGGGCTGTCCCCCTTCATTGAACACTTGATATAT
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