FC875307

Overview
NameFC875307
Unique NameFC875307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP11_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.110e-46
Identity = 82/155 (52.90%), Postives = 115/155 (74.19%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            L+E +++ LC  +KEIL E+ N+  +++P+ ICGDIHGQ+ DL  LF+ GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++YP+   ILRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+V+ +I C+HGGLSP ++ L
Sbjct:   27 LTESEIRLLCLTSKEILSEQPNLLELEAPIKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAFKIKYPENFFILRGNHECASINRIYGFYDECKRRY-NIRLWKTFTDCFNCLPVAAIVDEKILCMHGGLSPELKTL 180          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1_MEDVA (Serine/threonine-protein phosphatase PP1 OS=Medicago varia GN=PP1 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 80/155 (51.61%), Postives = 113/155 (72.90%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            L+E  ++ LC  AKEI + + N+  +++P+ ICGD+HGQF DL  LF+ GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++Y +   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ ALV+ +I C+HGGLSP +++L
Sbjct:   27 LTEADIRQLCTSAKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRY-NVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPELKNL 180          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: GLC7B_CAEEL (Serine/threonine-protein phosphatase PP1-beta OS=Caenorhabditis elegans GN=gsp-2 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 85/197 (43.15%), Postives = 127/197 (64.47%), Query Frame = 3
Query:  102 NPDTVIPIRFRIRESKMGANXXXXXXXXXXXEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            N D +I     +R SK G N                      L+E ++K LC+K++EI + +  +  +++P+ ICGD+HGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+++ +IFC HGGLSP ++ +
Sbjct:    7 NLDNIISRLLEVRGSKPGKNVQ--------------------LTESEIKGLCQKSREIFLSQPILLELEAPLKICGDVHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPVAAIIDEKIFCCHGGLSPDLQSM 182          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: GLC7B_CAEBR (Serine/threonine-protein phosphatase PP1-beta OS=Caenorhabditis briggsae GN=gsp-2 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 85/197 (43.15%), Postives = 127/197 (64.47%), Query Frame = 3
Query:  102 NPDTVIPIRFRIRESKMGANXXXXXXXXXXXEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            N D +I     +R SK G N                      L+E ++K LC+K++EI + +  +  +++P+ ICGD+HGQ++DL  LF+ GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R+Y N  +WK FTD F+  P+ A+++ +IFC HGGLSP ++ +
Sbjct:    7 NLDNIISRLLEVRGSKPGKNVQ--------------------LTESEIKGLCQKSREIFLSQPILLELEAPLKICGDVHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPVAAIIDEKIFCCHGGLSPDLQSM 182          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1_PHAVU (Serine/threonine-protein phosphatase PP1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.600e-46
Identity = 80/155 (51.61%), Postives = 116/155 (74.84%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            LSE +++ LC  A++I + +  +  +++P+ +CGDIHGQ+ DL  LF+ GG  P  NYLF+GDYVDRG  S+ET+ LL+A K+RYP +I +LRGNHE  +I ++YGFYDEC R++ N  +WKIFTD F+  P++AL++ +I C+HGGLSP +E L
Sbjct:   24 LSESEIRQLCVHARQIFLSQPILLELRAPMRVCGDIHGQYQDLLRLFEYGGYPPAANYLFLGDYVDRGKQSLETICLLLAYKIRYPDKIFLLRGNHEEAKINRIYGFYDECKRRF-NVRLWKIFTDCFNCLPVSALIDDKILCMHGGLSPELESL 177          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP11_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Nicotiana tabacum GN=NPP1 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.701e-46
Identity = 78/155 (50.32%), Postives = 115/155 (74.19%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            LSE ++++LC  ++EI +++ N+  +K P+ ICGDIHGQ+ DL  LF+ GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++YP+   +LRGNHE   I ++YGFYDEC R++ N  +WK FT+ F+  P+ AL++ +I C+HGGLSP + +L
Sbjct:   41 LSEAEIRSLCSASREIFLQQPNLLDLKPPIKICGDIHGQYGDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRF-NVKLWKCFTECFNCLPVAALIDEKILCMHGGLSPVLTNL 194          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: GLC7A_CAEEL (Serine/threonine-protein phosphatase PP1-alpha OS=Caenorhabditis elegans GN=gsp-1 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.701e-46
Identity = 80/170 (47.06%), Postives = 124/170 (72.94%), Query Frame = 3
Query:  198 QISQLMQCKP-----LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            ++ ++  C+P     +SE +++ALC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P+ NYLF+GDYVDRG  S+ET+ LL+A KV+YP+   +LRGNHE   I ++YGFYDEC R++ +  +WK FTD F+  P+ AL++ +IFC HGGLSP ++++
Sbjct:   15 RLLEVRGCRPGKPVTMSEAEIRALCHKSREIFLSQPILLELEAPLKICGDIHGQYNDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKVKYPENFFLLRGNHECASINRIYGFYDECKRRF-SIKLWKTFTDCFNCLPIAALIDEKIFCCHGGLSPDLQNM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: GLC7A_CAEBR (Serine/threonine-protein phosphatase PP1-alpha OS=Caenorhabditis briggsae GN=gsp-1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.701e-46
Identity = 80/170 (47.06%), Postives = 124/170 (72.94%), Query Frame = 3
Query:  198 QISQLMQCKP-----LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            ++ ++  C+P     +SE +++ALC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF+ GG  P+ NYLF+GDYVDRG  S+ET+ LL+A KV+YP+   +LRGNHE   I ++YGFYDEC R++ +  +WK FTD F+  P+ AL++ +IFC HGGLSP ++++
Sbjct:   15 RLLEVRGCRPGKPVTMSEAEIRALCHKSREIFLSQPILLELEAPLKICGDIHGQYNDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKVKYPENFFLLRGNHECASINRIYGFYDECKRRF-SIKLWKTFTDCFNCLPIAALIDEKIFCCHGGLSPDLQNM 183          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP13_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Arabidopsis thaliana GN=TOPP3 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.140e-46
Identity = 80/155 (51.61%), Postives = 113/155 (72.90%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            L+E ++K LC  AK+I + + N+  +++P+ ICGD HGQF DL  LF+ GG  P  NYLF+GDYVDRG  SVET+ LL+A K++Y +   +LRGNHE   I ++YGFYDEC ++Y +  +WKIFTD F+  P+ AL++ +I C+HGGLSP ++HL
Sbjct:   27 LTEAEIKHLCSTAKQIFLTQPNLLELEAPIKICGDTHGQFSDLLRLFEYGGYPPAANYLFLGDYVDRGKQSVETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKKRY-SVRVWKIFTDCFNCLPVAALIDEKILCMHGGLSPELKHL 180          
BLAST of FC875307 vs. ExPASy Swiss-Prot
Match: PP1_MAIZE (Serine/threonine-protein phosphatase PP1 OS=Zea mays GN=PP1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.019e-46
Identity = 79/155 (50.97%), Postives = 113/155 (72.90%), Query Frame = 3
Query:  228 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALVESEIFCLHGGLSPFIEHL 692
            LSE ++K LC  AKEI +++ N+  +++P+ ICGD+HGQ+ DL  LF  GG  P  NYLF+GDYVDRG  S+ET+ LL+A KV+YP+   +LRGNHE   + ++YGFYDEC R++ +  +WK FTD F+  P++AL++ +I C+HGGLSP +  L
Sbjct:   27 LSESEIKQLCAAAKEIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFDYGGYPPQANYLFLGDYVDRGKQSLETICLLLAYKVKYPENFFLLRGNHECASVNRIYGFYDECKRRF-SVKLWKTFTDCFNCLPVSALIDEKILCMHGGLSPELNKL 180          
The following BLAST results are available for this feature:
BLAST of FC875307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP11_ACECL2.110e-4652.90Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP1_MEDVA2.756e-4651.61Serine/threonine-protein phosphatase PP1 OS=Medica... [more]
GLC7B_CAEEL2.756e-4643.15Serine/threonine-protein phosphatase PP1-beta OS=C... [more]
GLC7B_CAEBR2.756e-4643.15Serine/threonine-protein phosphatase PP1-beta OS=C... [more]
PP1_PHAVU3.600e-4651.61Serine/threonine-protein phosphatase PP1 OS=Phaseo... [more]
PP11_TOBAC4.701e-4650.32Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
GLC7A_CAEEL4.701e-4647.06Serine/threonine-protein phosphatase PP1-alpha OS=... [more]
GLC7A_CAEBR4.701e-4647.06Serine/threonine-protein phosphatase PP1-alpha OS=... [more]
PP13_ARATH6.140e-4651.61Serine/threonine-protein phosphatase PP1 isozyme 3... [more]
PP1_MAIZE8.019e-4650.97Serine/threonine-protein phosphatase PP1 OS=Zea ma... [more]

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Properties
Property NameValue
Genbank descriptionC31402E05EF CTVClemen1 Citrus clementina cDNA clone C31402E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875307 ID=FC875307; Name=FC875307; organism=Citrus clementina; type=EST; length=698bp
GACGCGCGCTCTCATTTCGACTTCGTCGGCTCCGCTACACAAGACTGAAG
AATCACACAAACGAAACTCTCTGATCTCACTCTAGGGTTAGGGATATCCC
TAATCCGGACACCGTTATCCCGATTCGGTTTAGGATTCGAGAATCAAAGA
TGGGCGCAAATTCGTTATCCACTGACACGACCACCGACCTCGACGAGCAG
ATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAACCACAGGTTAAAGC
ATTATGCGAGAAGGCTAAGGAGATATTGATGGAAGAAAGCAATGTACAGC
CTGTGAAAAGTCCAGTGACAATTTGTGGCGATATTCATGGGCAGTTTCAT
GATCTTGCAGAACTTTTTCAAATTGGCGGGAAGTGTCCAGATACCAATTA
CTTGTTTATGGGAGATTATGTGGACCGTGGGTATTATTCTGTTGAAACAG
TTACGCTCTTAGTGGCCTTGAAGGTGCGGTATCCTCAGCGGATCACTATT
CTTAGAGGAAACCATGAGAGTCGTCAGATTACTCAAGTTTATGGATTCTA
TGATGAATGTCTACGGAAGTATGGCAATGCTAACATTTGGAAGATTTTTA
CTGACCTTTTTGACTACTTTCCGTTGACTGCCTTGGTAGAGTCAGAAATA
TTCTGTCTGCATGGTGGGCTGTCCCCCTTCATTGAACACTTGATATAT
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