FC875308

Overview
NameFC875308
Unique NameFC875308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:2..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 1
Query:  439 EQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPD 654
            +Q +   ++ R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK  FP+
Sbjct:   25 DQHQPDQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPE 96          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 38/69 (55.07%), Postives = 43/69 (62.32%), Query Frame = 1
Query:  448 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPD 654
            +KS  R+R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T               RG KAK  FP+
Sbjct:   61 EKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPE 127          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 34/62 (54.84%), Postives = 38/62 (61.29%), Query Frame = 1
Query:  469 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPD 654
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK  FP+
Sbjct:   86 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPE 147          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  418 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPD 654
            +TA    E +  S ++ R+ +YRG+RQRPWGKWAAEIRDP K  RVWLGTF+                RG KAK  FP+
Sbjct:  165 TTATASSETSSFSGDQPRR-RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPE 242          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.424e-12
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  406 KSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPDETPA 666
            KS G    + V      T RK+   +RG+RQRPWG+WAAEIRDPT+G RVWLGT++T              ++G  A   FP  T A
Sbjct:   76 KSIGDRKRRSVSPDSDVTRRKK---FRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTA 159          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 41/96 (42.71%), Postives = 49/96 (51.04%), Query Frame = 1
Query:  382 PFTFSAGRKSHGSTAVKHVEQAKKST-----ERKRKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFP 651
            PF FSAG         + V    ++T     E  R   YRG+R+RPWGK+AAEIRDP K G RVWLGT+ T              +RG KA   FP
Sbjct:   67 PFNFSAGEVKSEQREEEIVVSPAETTAAPAAELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFP 162          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  478 QYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFP 651
            ++RG+RQRPWGKWAAEIRDP++ VRVWLGTF+T              +RG  A+  FP
Sbjct:   86 KFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1
Query:  454 STERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFP 651
            ST   R+  YRG+R+RPWG++AAEIRDP K  RVWLGTF+T              +RG KAK  FP
Sbjct:    3 STTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP 68          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 36/73 (49.32%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  442 QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPDE 657
            +  K    + K  YRG+RQRPWGK+AAEIRDP K G RVWLGTF+T              +RG KA   FP E
Sbjct:  143 EVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLE 215          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 39/90 (43.33%), Postives = 48/90 (53.33%), Query Frame = 1
Query:  403 RKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPDETPAAA 672
            R     + V  V  A  +T  ++K  +RG+RQRPWGKWAAEIRDP K VR+WLGT+NT              +RG  A   F   TP  A
Sbjct:   98 RAVKSESTVSPVVSATTTTTGEKK--FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF-SVTPTTA 184          
The following BLAST results are available for this feature:
BLAST of FC875308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
EF113_ARATH5.781e-1448.61Ethylene-responsive transcription factor ERF113 OS... [more]
EF112_ARATH5.781e-1455.07Ethylene-responsive transcription factor ERF112 OS... [more]
EF114_ARATH2.197e-1354.84Ethylene-responsive transcription factor ERF114 OS... [more]
ABR1_ARATH2.869e-1348.10Ethylene-responsive transcription factor ABR1 OS=A... [more]
PTI6_SOLLC1.424e-1243.68Pathogenesis-related genes transcriptional activat... [more]
ERF1_TOBAC1.205e-1142.71Ethylene-responsive transcription factor 1 OS=Nico... [more]
CRF1_ARATH1.205e-1153.45Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF81_ARATH1.574e-1151.52Ethylene-responsive transcription factor 12 OS=Ara... [more]
EF102_ARATH1.574e-1149.32Ethylene-responsive transcription factor 5 OS=Arab... [more]
CRF2_ARATH2.056e-1143.33Ethylene-responsive transcription factor CRF2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC31402E06EF CTVClemen1 Citrus clementina cDNA clone C31402E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875308 ID=FC875308; Name=FC875308; organism=Citrus clementina; type=EST; length=674bp
GATCTCATCATTCACTAGACACTGAAGAATCCAAAACTCTCTCAAGCCAA
CAAAAGCAAATTTTACATTTAACCCATTCTCTCCTAAAAATCTTTTCTCT
TTAGTGCCTGAACAAACCAGAAGAAACGAGAAACCTTAACCATGTGTGGA
GGTGCTATCATTTCGGGCTACATCCCGCCCACCGTGCCGGGCCGGCCAAA
GAAGCTGACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCCAACA
AGAAGTACTCAAAGCCGATCGTCGACGATGACTTCGAGGCTGATTTCCAA
GGATTCAAGGACGATGAAGAAGAGTCTGACATTGATGGTGACGTGGACGT
TGATGCCGACTCGATGATGGCTGATATTAAGCCTTTCACTTTCTCAGCTG
GTCGCAAGTCTCATGGATCTACAGCCGTGAAGCACGTTGAACAAGCTAAA
AAATCCACAGAAAGAAAGAGGAAGAATCAATATAGGGGAATTAGGCAGCG
TCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAAAGGGGTTC
GTGTCTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTAGGGCTTAT
GATGCCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGGTTACTTTCC
AGATGAAACTCCTGCTGCTGCTCC
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