FC875308

Overview
NameFC875308
Unique NameFC875308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:2..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 1
Query:  463 RKRKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFP 651
            R++  QYRG+R+RPWGK+AAEIRDP K G RVWLGT+ T              +RG KAK  FP
Sbjct:   86 RQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFP 149          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 1
Query:  457 TERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPDET 660
            T+  ++  YRG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK  FP  T
Sbjct:   19 TDGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSPT 86          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1
Query:  460 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFP 651
            E+ ++ +YRG+R+RPWG++AAEIRDP K  RVWLG+FNT               RG KA   FP
Sbjct:   46 EKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 35/63 (55.56%), Postives = 39/63 (61.90%), Query Frame = 1
Query:  472 KNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPDE 657
            K  YRG+RQRPWGK+AAEIRDP  KG RVWLGTF+T              +RG KA   FP E
Sbjct:  142 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLE 204          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 35/63 (55.56%), Postives = 39/63 (61.90%), Query Frame = 1
Query:  472 KNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPDE 657
            K  YRG+RQRPWGK+AAEIRDP  KG RVWLGTF+T              +RG KA   FP E
Sbjct:  135 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLE 197          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  394 SAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFP 651
            S+   +  S  V+ V   KK+   +    YRG+R+RPWGK+AAEIRDP  KG R+WLGTF +              +RG+KA   FP
Sbjct:   78 SSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFP 164          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 1
Query:  403 RKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFP 651
            R+  GS+AV             ++ ++RG+R+RPWG++AAEIRDP K  RVWLGTF++              +RG KAK  FP
Sbjct:    2 RRGRGSSAVAGPTVVAAINGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFP 84          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 1
Query:  457 TERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFP 651
            T  +++  +RG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK  FP
Sbjct:   25 TTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 1
Query:  436 VEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFP 651
            V+ A   T      +YRG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK  FP
Sbjct:    5 VKTAAVKTNEGNGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 31/58 (53.45%), Postives = 37/58 (63.79%), Query Frame = 1
Query:  478 QYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFP 651
            +YRG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK  FP
Sbjct:   24 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
The following BLAST results are available for this feature:
BLAST of FC875308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ERF99_ARATH2.685e-1153.13Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF4_TOBAC2.685e-1148.53Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF77_ARATH3.507e-1148.44Ethylene-responsive transcription factor 10 OS=Ara... [more]
ERF5_TOBAC3.507e-1155.56Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_NICSY3.507e-1155.56Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF107_ARATH3.507e-1141.38Ethylene-responsive transcription factor ERF107 OS... [more]
ERF82_ARATH4.580e-1140.96Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF80_ARATH5.982e-1147.69Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF76_ARATH5.982e-1147.22Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF78_ARATH7.813e-1153.45Ethylene-responsive transcription factor 4 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC31402E06EF CTVClemen1 Citrus clementina cDNA clone C31402E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875308 ID=FC875308; Name=FC875308; organism=Citrus clementina; type=EST; length=674bp
GATCTCATCATTCACTAGACACTGAAGAATCCAAAACTCTCTCAAGCCAA
CAAAAGCAAATTTTACATTTAACCCATTCTCTCCTAAAAATCTTTTCTCT
TTAGTGCCTGAACAAACCAGAAGAAACGAGAAACCTTAACCATGTGTGGA
GGTGCTATCATTTCGGGCTACATCCCGCCCACCGTGCCGGGCCGGCCAAA
GAAGCTGACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCCAACA
AGAAGTACTCAAAGCCGATCGTCGACGATGACTTCGAGGCTGATTTCCAA
GGATTCAAGGACGATGAAGAAGAGTCTGACATTGATGGTGACGTGGACGT
TGATGCCGACTCGATGATGGCTGATATTAAGCCTTTCACTTTCTCAGCTG
GTCGCAAGTCTCATGGATCTACAGCCGTGAAGCACGTTGAACAAGCTAAA
AAATCCACAGAAAGAAAGAGGAAGAATCAATATAGGGGAATTAGGCAGCG
TCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAAAGGGGTTC
GTGTCTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTAGGGCTTAT
GATGCCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGGTTACTTTCC
AGATGAAACTCCTGCTGCTGCTCC
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