FC875309

Overview
NameFC875309
Unique NameFC875309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:2..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRIA_ANASP (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=petC1 PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.720e-63
Identity = 109/170 (64.12%), Postives = 127/170 (74.71%), Query Frame = 2
Query:  221 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730
            VPDMG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+  + +L +H  GDRTL +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+VVRGPAP SLAL+HA   N K+V   WTETDFRTGE PWW+
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPAAGGAGGGTTAKDELGNDVSVSKFLESHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTSWTETDFRTGEEPWWS 179          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPW (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH7803) GN=petC PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.034e-62
Identity = 108/177 (61.02%), Postives = 131/177 (74.01%), Query Frame = 2
Query:  200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730
            T +PA  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL+TH  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++ N  V    WT+TDFRTGE PWWA
Sbjct:    2 TQMPAGDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPRAAGSGGGTSAKDELGNAVTASGWLSTHPAGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTDTDFRTGEKPWWA 178          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP6 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petC PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.350e-62
Identity = 108/173 (62.43%), Postives = 129/173 (74.57%), Query Frame = 2
Query:  212 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730
            A  VP MG+RQ MNLL  G+V+      L P   +F PP  G +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH ++ + KV   PWTETDFRTG+ PWWA
Sbjct:    7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTGDNPWWA 179          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_SYNE7 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus (strain PCC 7942) GN=petC PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.350e-62
Identity = 108/173 (62.43%), Postives = 129/173 (74.57%), Query Frame = 2
Query:  212 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730
            A  VP MG+RQ MNLL  G+V+      L P   +F PP  G +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH ++ + KV   PWTETDFRTG+ PWWA
Sbjct:    7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTGDNPWWA 179          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9311) GN=petC PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.928e-62
Identity = 107/177 (60.45%), Postives = 130/177 (73.45%), Query Frame = 2
Query:  200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730
            T +PA  VP MG+RQ MNLL  G+V+      L P A +F PP     GGGT+AKD +GN + A+ WL++H  GDR+L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++ N  V    WTETDFRTGE PWW+
Sbjct:    2 TQMPASDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPRAAGGGGGTSAKDELGNSVTASGWLSSHAEGDRSLVQGLKGDPTYLIVEGVDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVDNDNVFVSQWTETDFRTGEKPWWS 178          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_MASLA (Cytochrome b6-f complex iron-sulfur subunit OS=Mastigocladus laminosus GN=petC PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 5.130e-62
Identity = 105/169 (62.13%), Postives = 126/169 (74.56%), Query Frame = 2
Query:  221 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWW 727
            VPDMG+RQ MNLL  G V+      L P   +F PP  G+ GGGTTAKD +GN++  + +L +H  GDR L +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+V+RGPAPLSLAL HA + +  +V  PWTETDFRTGE PWW
Sbjct:   10 VPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPWW 178          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRIB_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=petC2 PE=3 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 5.130e-62
Identity = 107/171 (62.57%), Postives = 131/171 (76.61%), Query Frame = 2
Query:  221 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-XNGKVVFVPWTETDFRTGEAPWWA 730
            VPD+G+RQ MNLL  G ++      L P   +  PP  G +GGG TAKDA+GND+   ++L +H  GDR L +GLKGDPTY+VV+ D T+A+YGINAVCTHLGCVVPWN++ENKF+CPCHGSQYN +G+VVRGPAPLSLALAHA +  + K+V   WTETDFRT E PWWA
Sbjct:   10 VPDLGRRQFMNLLTFGTITGVAAGALYPAVKYLIPPSSGGSGGGVTAKDALGNDVKVTEFLASHNAGDRVLAQGLKGDPTYIVVQGDDTIANYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVRGPAPLSLALAHATVTDDDKLVLSTWTETDFRTDEDPWWA 180          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_SYNSC (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9605) GN=petC PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.750e-62
Identity = 106/177 (59.89%), Postives = 132/177 (74.58%), Query Frame = 2
Query:  200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730
            T + +  VP MG+RQ MNLL  G+V+      L P A +F PP    +GGGT+AKD +GN I A+ WL++H  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY++ G+VVRGPAPLSLALA+ ++ N  V    WTETDFRTG+ PWWA
Sbjct:    2 TQLSSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPKAAGSGGGTSAKDELGNPITASGWLSSHPEGDRSLVQGLKGDPTYLIVEGEDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDSTGKVVRGPAPLSLALANVSVENDNVFVSQWTETDFRTGDKPWWA 178          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS9 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9902) GN=petC PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.949e-61
Identity = 107/177 (60.45%), Postives = 130/177 (73.45%), Query Frame = 2
Query:  200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730
            T IP+  VP MG+RQ MNLL  G+V+      L P A +F PP    +GGGTTAKD +GN + A  WL+TH  GDR+L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++ +  V    W+ETDFRTG+ PWWA
Sbjct:    2 TQIPSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVARYFIPPKAAGSGGGTTAKDELGNVVTATGWLSTHPEGDRSLVQGLKGDPTYLIVEGADAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVEDDNVFVSEWSETDFRTGDKPWWA 178          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_SYNR3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain RCC307) GN=petC PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.949e-61
Identity = 107/177 (60.45%), Postives = 127/177 (71.75%), Query Frame = 2
Query:  200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730
            T I A  VP MG+RQ MNLL  G+V+      L P   +F PP    AGGGTTAKD +GND+ A+ WL  H  GDR+L +GLKGDPTYL+V+   ++  YGINA+CTHLGCVVPWN+  NKF+CPCHGSQY+  G+VVRGPAPLSLALAH N+ N  V    W+ETDFRT E PWWA
Sbjct:    2 TQISAKDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPKASGAGGGTTAKDELGNDVTASGWLADHKEGDRSLVQGLKGDPTYLIVDGPDSIGDYGINAICTHLGCVVPWNAGANKFMCPCHGSQYDATGKVVRGPAPLSLALAHVNVENDNVFVSQWSETDFRTDEKPWWA 178          
The following BLAST results are available for this feature:
BLAST of FC875309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_ANASP2.720e-6364.12Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]
UCRI_SYNPW1.034e-6261.02Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNP61.350e-6262.43Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNE71.350e-6262.43Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNS33.928e-6260.45Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_MASLA5.130e-6262.13Cytochrome b6-f complex iron-sulfur subunit OS=Mas... [more]
UCRIB_SYNY35.130e-6262.57Cytochrome b6-f complex iron-sulfur subunit 2 OS=S... [more]
UCRI_SYNSC8.750e-6259.89Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNS91.949e-6160.45Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNR31.949e-6160.45Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]

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Properties
Property NameValue
Genbank descriptionC31402E07EF CTVClemen1 Citrus clementina cDNA clone C31402E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875309 ID=FC875309; Name=FC875309; organism=Citrus clementina; type=EST; length=737bp
GGAAATCAAAGTCTCACTCGGTTGCCTCCAATAATTCTCCACAATGGCTT
CCTCCTCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATGCTCAAGCAAG
AGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAACCAGCAAGGAC
CCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGTGCCAGGCTA
CAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGGCAGCTCATG
AATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATTTATGTTGGT
TCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTGCTGGTGGTG
GTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCTGATTGG
CTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATTGAAGGG
AGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCATCATATG
GAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGGAATTCA
GCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAATAACCA
AGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGGCTCATG
CCAACATTNGAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAAACAGAT
TTCAGAACTGGTGAAGCTCCATGGTGGGCTTAACTTG
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