FC875309
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 1.708e-57 Identity = 100/177 (56.50%), Postives = 124/177 (70.06%), Query Frame = 2 Query: 200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730 T + ++ VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN + WL TH GDR+L +GLKGDPTYL+V + + +G+NA+CTHLGCVVPW+S NKFICPCHGSQY+ G+VVRGPAPLSLALAH +I + V+ W+ETDFRT E PWWA Sbjct: 2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 2.230e-57 Identity = 101/177 (57.06%), Postives = 124/177 (70.06%), Query Frame = 2 Query: 200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730 T + ++ VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN I WL TH GDR+L +GLKGDPTYL+V + + +G+NA+CTHLGCVVPW+S NKFICPCHGSQY+ G+VVRGPAPLSLALAH +I + V+ W+ETDFRT E PWWA Sbjct: 2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEVGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 2.913e-57 Identity = 101/177 (57.06%), Postives = 123/177 (69.49%), Query Frame = 2 Query: 200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730 T + + VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN I WL TH GDR+L +GLKGDPTYL+V + + +G+NA+CTHLGCVVPW+S NKFICPCHGSQY+ G+VVRGPAPLSLALAH +I + V+ W+ETDFRT E PWWA Sbjct: 2 TQLSSKDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGGIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 3.804e-57 Identity = 98/177 (55.37%), Postives = 124/177 (70.06%), Query Frame = 2 Query: 200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730 T + ++ VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN + WL +H GDR+L +GLKGDPTYL+V + + +G+NA+CTHLGCVVPW+S NKFICPCHGSQY+ G+VVRGPAPLSLALAH ++ + V+ W+ETDFRT E PWWA Sbjct: 2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLASHQAGDRSLVQGLKGDPTYLIVNSEGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 4.969e-57 Identity = 98/177 (55.37%), Postives = 123/177 (69.49%), Query Frame = 2 Query: 200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730 T + ++ VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN + WL H GDR+L +GLKGDPTYL+V + + +G+NA+CTHLGCVVPW+S NKFICPCHGSQY+ G+VVRGPAPLSLALAH ++ + V+ W+ETDFRT E PWWA Sbjct: 2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLANHQAGDRSLVQGLKGDPTYLIVNSEGDIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRIA_BIGNA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Bigelowiella natans GN=petC PE=2 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55 Identity = 104/184 (56.52%), Postives = 120/184 (65.22%), Query Frame = 2 Query: 182 KIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKD-KTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730 K QA D VPDMGKR+LMN L+L AV+ Y +F PP G GG A DA+GN + A W +H R L +G+KGDPTYL+V D TL SYG+NA+CTHLGCVVPW++A NKF CPCHGSQY G VVRGPAP L LAH NGK++ PWTETDFRTGE PWWA Sbjct: 69 KAVAQAFLSNPDMVPDMGKRKLMNNLVLAAVAPVVASAGGCYLYYFYPPQTGGGGGAVGALDALGNPVSAESWFKSHKKNARDLVQGIKGDPTYLIVNDDGSTLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQYAPDGHVVRGPAPRPLQLAHVEDDNGKILLSPWTETDFRTGEKPWWA 252
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJB (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. GN=petC PE=3 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 9.097e-43 Identity = 83/161 (51.55%), Postives = 102/161 (63.35%), Query Frame = 2 Query: 224 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFR 706 P M +R L+N LL G+V + L P +F PP G G G A+DA+G I ++ L TH DR L +GLKGDPTY+V++ +A+YG+NAVCTHLGCVVPWN EN F CPCHGSQY G+V+RGPAP SL L A + V F PW DFR Sbjct: 11 PPMSRRVLLNALLSGSVGVVVVGALYPVVKYFIPPSAGGGGEGLIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJA (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain JA-3-3Ab) GN=petC PE=3 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 2.027e-42 Identity = 82/161 (50.93%), Postives = 102/161 (63.35%), Query Frame = 2 Query: 224 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFR 706 P M +R +N LL +V + L P +F PP G AG G A+DA+G I ++ L TH DR L +GLKGDPTY+V++ +A+YG+NAVCTHLGCVVPWN+ EN F CPCHGSQY G+V+RGPAP SL L A + V F PW DFR Sbjct: 11 PPMSRRVFLNALLSSSVGVVVVGTLYPVVKYFIPPSSGGAGEGVIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNAGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRIA_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=petC1 PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.739e-39 Identity = 79/169 (46.75%), Postives = 99/169 (58.58%), Query Frame = 2 Query: 224 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPG-LGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWW 727 P +RQL+N L V++ FF PP G AGGG AKD +GN I A+ L PG R L GL GDPTYL+V++D +L S GI CTHLGC PWN + +F CPCHGS+Y+ G V RGPAPL L + + + ++ PWT+ D RTGE PWW Sbjct: 10 PSYSRRQLLNFLAGTTVAVTASAGAYAMGKFFVPPAEKGGAGGGIIAKDVLGNPIPASQIL-AEAPGTRALVAGLAGDPTYLIVKEDGSLDSIGIVDSCTHLGCTFPWNGNDQEFQCPCHGSRYHPDGSVARGPAPLPLKIVQVAVVDDQIFISPWTDLDPRTGEKPWW 177
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_GLOVI (Cytochrome b6-f complex iron-sulfur subunit OS=Gloeobacter violaceus GN=petC PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 7.970e-39 Identity = 81/180 (45.00%), Postives = 105/180 (58.33%), Query Frame = 2 Query: 212 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK---GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFR-----TGEAPWW 727 A +P M +RQL++ + GA++ T L P +F PP G G AKD G DI + L PG+ LT GL GD TY+V+ K +A++GINAVCTHLGCVVPW++ +F CPCHGS YN G + RGPAP LAL A + + KV+ PWTE DFR + P+W Sbjct: 6 AQEIP-MSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPSTAGGGEGVAAKDKEGKDISVSKLLAAATPGEPVLTLGLDVNGGDATYIVINDQKEIANFGINAVCTHLGCVVPWDNGAKQFKCPCHGSVYNADGGLERGPAPQPLALVKATVSDDKVLIAPWTEQDFRCTDLWCNKDPYW 184 The following BLAST results are available for this feature:
BLAST of FC875309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875309 ID=FC875309; Name=FC875309; organism=Citrus clementina; type=EST; length=737bpback to top |