FC875309

Overview
NameFC875309
Unique NameFC875309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.708e-57
Identity = 100/177 (56.50%), Postives = 124/177 (70.06%), Query Frame = 2
Query:  200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +I +  V+   W+ETDFRT E PWWA
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.230e-57
Identity = 101/177 (57.06%), Postives = 124/177 (70.06%), Query Frame = 2
Query:  200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +I +  V+   W+ETDFRT E PWWA
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEVGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.913e-57
Identity = 101/177 (57.06%), Postives = 123/177 (69.49%), Query Frame = 2
Query:  200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730
            T + +  VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +I +  V+   W+ETDFRT E PWWA
Sbjct:    2 TQLSSKDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGGIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.804e-57
Identity = 98/177 (55.37%), Postives = 124/177 (70.06%), Query Frame = 2
Query:  200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL +H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++ +  V+   W+ETDFRT E PWWA
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLASHQAGDRSLVQGLKGDPTYLIVNSEGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.969e-57
Identity = 98/177 (55.37%), Postives = 123/177 (69.49%), Query Frame = 2
Query:  200 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL  H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++ +  V+   W+ETDFRT E PWWA
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLANHQAGDRSLVQGLKGDPTYLIVNSEGDIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRIA_BIGNA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Bigelowiella natans GN=petC PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 104/184 (56.52%), Postives = 120/184 (65.22%), Query Frame = 2
Query:  182 KIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKD-KTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWWA 730
            K   QA     D VPDMGKR+LMN L+L AV+         Y  +F PP  G  GG   A DA+GN + A  W  +H    R L +G+KGDPTYL+V  D  TL SYG+NA+CTHLGCVVPW++A NKF CPCHGSQY   G VVRGPAP  L LAH    NGK++  PWTETDFRTGE PWWA
Sbjct:   69 KAVAQAFLSNPDMVPDMGKRKLMNNLVLAAVAPVVASAGGCYLYYFYPPQTGGGGGAVGALDALGNPVSAESWFKSHKKNARDLVQGIKGDPTYLIVNDDGSTLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQYAPDGHVVRGPAPRPLQLAHVEDDNGKILLSPWTETDFRTGEKPWWA 252          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJB (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. GN=petC PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.097e-43
Identity = 83/161 (51.55%), Postives = 102/161 (63.35%), Query Frame = 2
Query:  224 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFR 706
            P M +R L+N LL G+V +     L P   +F PP  G  G G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN  EN F CPCHGSQY   G+V+RGPAP SL L  A +    V F PW   DFR
Sbjct:   11 PPMSRRVLLNALLSGSVGVVVVGALYPVVKYFIPPSAGGGGEGLIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJA (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain JA-3-3Ab) GN=petC PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.027e-42
Identity = 82/161 (50.93%), Postives = 102/161 (63.35%), Query Frame = 2
Query:  224 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFR 706
            P M +R  +N LL  +V +     L P   +F PP  G AG G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN+ EN F CPCHGSQY   G+V+RGPAP SL L  A +    V F PW   DFR
Sbjct:   11 PPMSRRVFLNALLSSSVGVVVVGTLYPVVKYFIPPSSGGAGEGVIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNAGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRIA_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=petC1 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.739e-39
Identity = 79/169 (46.75%), Postives = 99/169 (58.58%), Query Frame = 2
Query:  224 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPG-LGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWW 727
            P   +RQL+N L    V++           FF PP   G AGGG  AKD +GN I A+  L    PG R L  GL GDPTYL+V++D +L S GI   CTHLGC  PWN  + +F CPCHGS+Y+  G V RGPAPL L +    + + ++   PWT+ D RTGE PWW
Sbjct:   10 PSYSRRQLLNFLAGTTVAVTASAGAYAMGKFFVPPAEKGGAGGGIIAKDVLGNPIPASQIL-AEAPGTRALVAGLAGDPTYLIVKEDGSLDSIGIVDSCTHLGCTFPWNGNDQEFQCPCHGSRYHPDGSVARGPAPLPLKIVQVAVVDDQIFISPWTDLDPRTGEKPWW 177          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_GLOVI (Cytochrome b6-f complex iron-sulfur subunit OS=Gloeobacter violaceus GN=petC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.970e-39
Identity = 81/180 (45.00%), Postives = 105/180 (58.33%), Query Frame = 2
Query:  212 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK---GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFR-----TGEAPWW 727
            A  +P M +RQL++ +  GA++  T   L P   +F PP     G G  AKD  G DI  +  L    PG+  LT GL    GD TY+V+   K +A++GINAVCTHLGCVVPW++   +F CPCHGS YN  G + RGPAP  LAL  A + + KV+  PWTE DFR       + P+W
Sbjct:    6 AQEIP-MSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPSTAGGGEGVAAKDKEGKDISVSKLLAAATPGEPVLTLGLDVNGGDATYIVINDQKEIANFGINAVCTHLGCVVPWDNGAKQFKCPCHGSVYNADGGLERGPAPQPLALVKATVSDDKVLIAPWTEQDFRCTDLWCNKDPYW 184          
The following BLAST results are available for this feature:
BLAST of FC875309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_PROM91.708e-5756.50Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM02.230e-5757.06Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM22.913e-5757.06Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMP3.804e-5755.37Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM54.969e-5755.37Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIA_BIGNA2.726e-5556.52Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNJB9.097e-4351.55Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNJA2.027e-4250.93Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_SYNY32.739e-3946.75Cytochrome b6-f complex iron-sulfur subunit 1 OS=S... [more]
UCRI_GLOVI7.970e-3945.00Cytochrome b6-f complex iron-sulfur subunit OS=Glo... [more]

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Properties
Property NameValue
Genbank descriptionC31402E07EF CTVClemen1 Citrus clementina cDNA clone C31402E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875309 ID=FC875309; Name=FC875309; organism=Citrus clementina; type=EST; length=737bp
GGAAATCAAAGTCTCACTCGGTTGCCTCCAATAATTCTCCACAATGGCTT
CCTCCTCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATGCTCAAGCAAG
AGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAACCAGCAAGGAC
CCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGTGCCAGGCTA
CAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGGCAGCTCATG
AATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATTTATGTTGGT
TCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTGCTGGTGGTG
GTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCTGATTGG
CTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATTGAAGGG
AGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCATCATATG
GAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGGAATTCA
GCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAATAACCA
AGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGGCTCATG
CCAACATTNGAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAAACAGAT
TTCAGAACTGGTGAAGCTCCATGGTGGGCTTAACTTG
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