FC875309

Overview
NameFC875309
Unique NameFC875309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRIC_ANASP (Cytochrome b6-f complex iron-sulfur subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=petC3 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.503e-37
Identity = 79/176 (44.89%), Postives = 102/176 (57.95%), Query Frame = 2
Query:  203 SIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFF-APPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWW 727
            SIP +  P + +RQL+N +    V++  G  L P   F  AP     AGG   AKD +G  I A+  L    P  R L  GL G+PTYL+V++D TL   G+   CTHLGC  PWN  + +F CPCHGS+Y   G VVRGPAPL L +    + +  ++  PWTETD RTG+ PWW
Sbjct:    4 SIPIES-PSLSRRQLLNFITGATVAVTAGAALYPAGKFLIAPAEKTGAGGAILAKDILGKQIPASQIL-AEPPQTRALVAGLAGEPTYLIVKEDHTLDRIGLVDNCTHLGCTFPWNPLDQQFQCPCHGSRYAPDGSVVRGPAPLPLKIVQVAVIDNSILISPWTETDPRTGKKPWW 177          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRIB_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC2 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.837e-35
Identity = 77/169 (45.56%), Postives = 93/169 (55.03%), Query Frame = 2
Query:  224 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWW 727
            P M +RQL+N      V+      + P   FF PP   + A GG  AKD IG+ I A+  L     G R L  GL G+PTYL V +D TL   GI   CTHLGC  PWN  + +F CPCHGS+Y+ QG V RGPA   L L H  + +  +    W ETD RTGE PWW
Sbjct:   10 PSMSRRQLLNFFTGAIVAATASAAIYPATKFFMPPAESTDAEGGVLAKDKIGHPIPASQIL-VQASGTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSRYDAQGSVERGPANRPLKLVHVQVKDDYIWISSWQETDPRTGEKPWW 177          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRIB_ANASP (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena sp. (strain PCC 7120) GN=petC2 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 76/169 (44.97%), Postives = 93/169 (55.03%), Query Frame = 2
Query:  224 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVVFVPWTETDFRTGEAPWW 727
            P M +RQL+N      V+      + P   FF PP   + A GG  A+D IG+ I A+  L     G R L  GL G+PTYL V +D TL   GI   CTHLGC  PWN  + +F CPCHGS+Y+ QG V RGPA   L L    + +  +   PW ETD RTGE PWW
Sbjct:   10 PSMSRRQLLNFFTGAIVATTASAAIYPATKFFMPPAESTDAEGGILAQDKIGHPIPASQIL-AQASGTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSRYDAQGSVERGPANRPLKLVQVQVKDDYIWISPWQETDPRTGEKPWW 177          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_CHLTE (Cytochrome b6-f complex iron-sulfur subunit OS=Chlorobium tepidum GN=petC PE=3 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  452 DPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVV 676
            D   +VV    +L +  ++A+CTHLGC+V W+ A +   CPCHG++Y   G+++ GP PL L      I +GK+V
Sbjct:  105 DDKVIVVNHGGSLTA--VSAICTHLGCLVHWDEAADMIACPCHGAKYTQDGKIISGPQPLPLKQYKVKIEDGKIV 177          
BLAST of FC875309 vs. ExPASy Swiss-Prot
Match: UCRI_CHLLT (Cytochrome b6-f complex iron-sulfur subunit OS=Chlorobium limicola f.sp. thiosulfatophilum GN=petC PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 2
Query:  464 LVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIXNGKVV 676
            +VV K   L +  ++AVCTHLGC+V W  A+N++ CPCHG++Y   G ++ GP PL L    A I    ++
Sbjct:  109 IVVNKGGALTA--VSAVCTHLGCLVNWVDADNQYFCPCHGAKYKLTGEIISGPQPLPLKQYKARIEGDSII 177          
The following BLAST results are available for this feature:
BLAST of FC875309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIC_ANASP1.503e-3744.89Cytochrome b6-f complex iron-sulfur subunit 3 OS=A... [more]
UCRIB_ANAVT1.837e-3545.56Cytochrome b6-f complex iron-sulfur subunit 2 OS=A... [more]
UCRIB_ANASP6.982e-3544.97Cytochrome b6-f complex iron-sulfur subunit 2 OS=A... [more]
UCRI_CHLTE4.869e-1240.00Cytochrome b6-f complex iron-sulfur subunit OS=Chl... [more]
UCRI_CHLLT1.085e-1142.25Cytochrome b6-f complex iron-sulfur subunit OS=Chl... [more]

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Properties
Property NameValue
Genbank descriptionC31402E07EF CTVClemen1 Citrus clementina cDNA clone C31402E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875309 ID=FC875309; Name=FC875309; organism=Citrus clementina; type=EST; length=737bp
GGAAATCAAAGTCTCACTCGGTTGCCTCCAATAATTCTCCACAATGGCTT
CCTCCTCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATGCTCAAGCAAG
AGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAACCAGCAAGGAC
CCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGTGCCAGGCTA
CAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGGCAGCTCATG
AATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATTTATGTTGGT
TCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTGCTGGTGGTG
GTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCTGATTGG
CTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATTGAAGGG
AGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCATCATATG
GAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGGAATTCA
GCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAATAACCA
AGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGGCTCATG
CCAACATTNGAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAAACAGAT
TTCAGAACTGGTGAAGCTCCATGGTGGGCTTAACTTG
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