FC875311

Overview
NameFC875311
Unique NameFC875311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 329.717 bits (844), Expect = 8.820e-90
Identity = 151/215 (70.23%), Postives = 182/215 (84.65%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSN 665
            MGRVIR QRKGAGSVFK+H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELF+AAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC VE   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GG N
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGN 215          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.566e-89
Identity = 152/215 (70.70%), Postives = 179/215 (83.26%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSN 665
            MGRVIRAQRKG GSVF +HT  RKG  + R+LD+ ER+GYLKG V +IIHDPGRGAPLA V FR P+++  +K+LFIAAEGMYTGQFVYCGK+A L +GNVLP+  +PEG +VCN+E   GDRG LAR SG+YA +I+HNPD   TRVKLPSGAKK++PS  RAM+G VAGGGR +KP+LKAG AY K++VKRNCWPKVRGVAMNPVEHPHGG N
Sbjct:    1 MGRVIRAQRKGEGSVFTAHTKKRKGEPKLRALDYAERHGYLKGTVKQIIHDPGRGAPLAVVHFRDPYKFNVRKQLFIAAEGMYTGQFVYCGKRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAMNPVEHPHGGGN 215          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL8_RAT (60S ribosomal protein L8 OS=Rattus norvegicus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 327.791 bits (839), Expect = 3.352e-89
Identity = 150/215 (69.77%), Postives = 182/215 (84.65%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSN 665
            MGRVIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GG N
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGN 215          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL8_PONAB (60S ribosomal protein L8 OS=Pongo abelii GN=RPL8 PE=2 SV=3)

HSP 1 Score: 327.791 bits (839), Expect = 3.352e-89
Identity = 150/215 (69.77%), Postives = 182/215 (84.65%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSN 665
            MGRVIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GG N
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGN 215          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL8_MOUSE (60S ribosomal protein L8 OS=Mus musculus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 327.791 bits (839), Expect = 3.352e-89
Identity = 150/215 (69.77%), Postives = 182/215 (84.65%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSN 665
            MGRVIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GG N
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGN 215          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL8_HUMAN (60S ribosomal protein L8 OS=Homo sapiens GN=RPL8 PE=1 SV=2)

HSP 1 Score: 327.791 bits (839), Expect = 3.352e-89
Identity = 150/215 (69.77%), Postives = 182/215 (84.65%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSN 665
            MGRVIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GG N
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGN 215          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL8_BOVIN (60S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=2 SV=3)

HSP 1 Score: 327.791 bits (839), Expect = 3.352e-89
Identity = 150/215 (69.77%), Postives = 182/215 (84.65%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSN 665
            MGRVIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GG N
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGN 215          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL8_DANRE (60S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE=2 SV=3)

HSP 1 Score: 326.25 bits (835), Expect = 9.752e-89
Identity = 149/215 (69.30%), Postives = 181/215 (84.19%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSN 665
            MGRVIR QRKGAGSVFK+H  HRKG A+ R +DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQF+YCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   +RVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GG N
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGAPLAKVMFRDPYRFKKRTELFIAAEGIHTGQFIYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGN 215          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL8_ICTPU (60S ribosomal protein L8 OS=Ictalurus punctatus GN=rpl8 PE=2 SV=3)

HSP 1 Score: 325.865 bits (834), Expect = 1.274e-88
Identity = 150/215 (69.77%), Postives = 181/215 (84.19%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSN 665
            MGRVIRAQRKGAGSVFK+H  HRKG A+ R +DF ER+GY+KG+V +IIHDPGRG PLA+V FR P+R+ K+ ELFIAAEG++TGQFV+CGKKA L +GNVLPV  +PEG ++C +E   GDRG LARASG+YA +ISHNP+   +RVKLPSGAKK+I S  RA++G VAGGGR +KP+LKAG AYHK++VKRNCWP+VRGVAMNPVEHP GG N
Sbjct:    1 MGRVIRAQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGTPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVFCGKKAQLNIGNVLPVGVMPEGTIICCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPSGAKKVISSTNRAVVGVVAGGGRIDKPILKAGRAYHKYKVKRNCWPRVRGVAMNPVEHPFGGGN 215          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL8_DICDI (60S ribosomal protein L8 OS=Dictyostelium discoideum GN=rpl8 PE=1 SV=2)

HSP 1 Score: 316.62 bits (810), Expect = 7.727e-86
Identity = 148/216 (68.52%), Postives = 178/216 (82.41%), Query Frame = 3
Query:   21 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSN 665
            MGR+IRAQRKG AGSVF +HTHHRKG  +FR+LD+ ER GY+KGVV EIIHDPGRGAPLARV F+   ++   K+LFIA EGM+TGQFV+ GKKATL +GN+LP+  +PEG ++CNVE  +GD G +AR SG+YA I+SHNPD   TR+KLPSG+KK + S  RAMIG VAGGGR +KP+LKAG A+HK+RVK+N WPKVRGVAMNPVEHPHGG N
Sbjct:    1 MGRIIRAQRKGKAGSVFGAHTHHRKGTPRFRALDYAERQGYVKGVVKEIIHDPGRGAPLARVVFKGLTQFKLDKQLFIAPEGMHTGQFVFAGKKATLTIGNILPIGKLPEGTIICNVEEKLGDCGAVARCSGNYATIVSHNPDEGVTRIKLPSGSKKNVSSLARAMIGIVAGGGRIDKPMLKAGRAFHKYRVKKNNWPKVRGVAMNPVEHPHGGGN 216          
The following BLAST results are available for this feature:
BLAST of FC875311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_XENTR8.820e-9070.2360S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]
RL8_AEDAL2.566e-8970.7060S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL8_RAT3.352e-8969.7760S ribosomal protein L8 OS=Rattus norvegicus GN=R... [more]
RL8_PONAB3.352e-8969.7760S ribosomal protein L8 OS=Pongo abelii GN=RPL8 P... [more]
RL8_MOUSE3.352e-8969.7760S ribosomal protein L8 OS=Mus musculus GN=Rpl8 P... [more]
RL8_HUMAN3.352e-8969.7760S ribosomal protein L8 OS=Homo sapiens GN=RPL8 P... [more]
RL8_BOVIN3.352e-8969.7760S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=... [more]
RL8_DANRE9.752e-8969.3060S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE... [more]
RL8_ICTPU1.274e-8869.7760S ribosomal protein L8 OS=Ictalurus punctatus GN... [more]
RL8_DICDI7.727e-8668.5260S ribosomal protein L8 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionC31402E09EF CTVClemen1 Citrus clementina cDNA clone C31402E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875311 ID=FC875311; Name=FC875311; organism=Citrus clementina; type=EST; length=690bp
GCTCTTTCGCCCTCTAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAG
GGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGC
CCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTG
TCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGA
GTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCAT
TGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAG
CCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGA
GCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGC
TAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATG
ACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGT
GGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAA
GCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAA
ACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCT
CATGGAGGAAGTAACACCAGCACATTGGTCATGCTAGCAC
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