FC875311
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_GEOSF (50S ribosomal protein L2 OS=Geobacter sp. (strain FRC-32) GN=rplB PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23 Identity = 73/222 (32.88%), Postives = 111/222 (50.00%), Query Frame = 3 Query: 18 EMGRVIRAQRKGAGSVFKSHTHHRKGPA---QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674 E V++ ++ G + F T G ++R +DF + VA + +DP R A +A + + +K IA + G V A + GN LP+RSIP G ++ N+E +G LAR++G +A +++ + +VKLPSG +++ C A IGQV + KAG + ++ KR PKVRGVAMNPV+HPHGG T Sbjct: 30 ERSLVVKLKKTGGRNNFGRITSRHIGGGHKQKYRIIDFRRDKRDIPAKVASVEYDPYRSARIALLNYADG-----EKRYIIAPLDLKVGDTVVASTSADIKPGNALPIRSIPLGTIIHNIELKIGKGAQLARSAGTFAQLMA--KEEKYAQVKLPSGEVRMVLMDCMATIGQVGNLDHENVSIGKAGRS--RWLGKR---PKVRGVAMNPVDHPHGGGEGRT 239
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RK2_PICAB (50S ribosomal protein L2, chloroplastic OS=Picea abies GN=rpl2 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23 Identity = 72/212 (33.96%), Postives = 108/212 (50.94%), Query Frame = 3 Query: 45 RKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674 R G G + HR G + +R +DF ++ G + I +DP R A + +V +++ K + G+ G + G KA + +GN LP+ ++P G + N+E +G G LARA+G A +I+ + T R LPSG ++I C A IGQV + KAG ++ KR+ +VRGVAMNPV+HPHGG T Sbjct: 43 RNGRGIIT---ARHRGGGHKRLYRQIDFRRDKEHISGKIVTIEYDPNRSAYICKVHYKNG-----DKMYILHPRGVMIGDTILSGPKAPISIGNALPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLR--LPSGEVRLISENCSATIGQVGNITANNRSFGKAG--AKRWLGKRS---EVRGVAMNPVDHPHGGGEGRT 239
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23 Identity = 66/198 (33.33%), Postives = 99/198 (50.00%), Query Frame = 3 Query: 84 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 659 HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ +P G + N+E +G G LARA+G A +I+ + + +KLPSG ++IP C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGG Sbjct: 51 HRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGGG-----EKRYILHPRGALIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGG 232
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_SYNAS (50S ribosomal protein L2 OS=Syntrophus aciditrophicus (strain SB) GN=rplB PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23 Identity = 66/186 (35.48%), Postives = 102/186 (54.84%), Query Frame = 3 Query: 102 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659 ++R +DF + G +A I +DP R A +A V++ +K IA + G+ + G++A + GN +P+R+IP G+++ N+E VG G L R++G Y +++ + +V+LPSG + I CRA IGQV + KAG ++ KR PKVRGV MNPV+HP GG Sbjct: 61 RYRFIDFKREKLDVPGKIASIEYDPNRSARIALVSYEDG-----EKRYIIAPAKVAVGEKIVSGERADIKAGNAMPLRNIPVGSLIHNIELKVGKGGQLIRSAGTYGQLMA--KEGSYAQVRLPSGEMRKIFIDCRATIGQVGNNEHENISVGKAGRT--RWAGKR---PKVRGVVMNPVDHPMGG 234
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_SALTY (50S ribosomal protein L2 OS=Salmonella typhimurium GN=rplB PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23 Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 3 Query: 105 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + + CRA +G+V + L KAG A R P VRG AMNPV+HPHGG Sbjct: 62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGG 234
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_SALTI (50S ribosomal protein L2 OS=Salmonella typhi GN=rplB PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23 Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 3 Query: 105 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + + CRA +G+V + L KAG A R P VRG AMNPV+HPHGG Sbjct: 62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGG 234
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_SALSV (50S ribosomal protein L2 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplB PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23 Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 3 Query: 105 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + + CRA +G+V + L KAG A R P VRG AMNPV+HPHGG Sbjct: 62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGG 234
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_SALPK (50S ribosomal protein L2 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplB PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23 Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 3 Query: 105 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + + CRA +G+V + L KAG A R P VRG AMNPV+HPHGG Sbjct: 62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGG 234
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_SALPB (50S ribosomal protein L2 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplB PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23 Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 3 Query: 105 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + + CRA +G+V + L KAG A R P VRG AMNPV+HPHGG Sbjct: 62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGG 234
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_SALPA (50S ribosomal protein L2 OS=Salmonella paratyphi A GN=rplB PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23 Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 3 Query: 105 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + + CRA +G+V + L KAG A R P VRG AMNPV+HPHGG Sbjct: 62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGG 234 The following BLAST results are available for this feature:
BLAST of FC875311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875311 ID=FC875311; Name=FC875311; organism=Citrus clementina; type=EST; length=690bpback to top |