FC875311

Overview
NameFC875311
Unique NameFC875311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_GEOSF (50S ribosomal protein L2 OS=Geobacter sp. (strain FRC-32) GN=rplB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 73/222 (32.88%), Postives = 111/222 (50.00%), Query Frame = 3
Query:   18 EMGRVIRAQRKGAGSVFKSHTHHRKGPA---QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674
            E   V++ ++ G  + F   T    G     ++R +DF      +   VA + +DP R A +A + +        +K   IA   +  G  V     A +  GN LP+RSIP G ++ N+E  +G    LAR++G +A +++   +    +VKLPSG  +++   C A IGQV         + KAG +  ++  KR   PKVRGVAMNPV+HPHGG    T
Sbjct:   30 ERSLVVKLKKTGGRNNFGRITSRHIGGGHKQKYRIIDFRRDKRDIPAKVASVEYDPYRSARIALLNYADG-----EKRYIIAPLDLKVGDTVVASTSADIKPGNALPIRSIPLGTIIHNIELKIGKGAQLARSAGTFAQLMA--KEEKYAQVKLPSGEVRMVLMDCMATIGQVGNLDHENVSIGKAGRS--RWLGKR---PKVRGVAMNPVDHPHGGGEGRT 239          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RK2_PICAB (50S ribosomal protein L2, chloroplastic OS=Picea abies GN=rpl2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 72/212 (33.96%), Postives = 108/212 (50.94%), Query Frame = 3
Query:   45 RKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674
            R G G +      HR G  +  +R +DF     ++ G +  I +DP R A + +V +++       K   +   G+  G  +  G KA + +GN LP+ ++P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A IGQV       +   KAG    ++  KR+   +VRGVAMNPV+HPHGG    T
Sbjct:   43 RNGRGIIT---ARHRGGGHKRLYRQIDFRRDKEHISGKIVTIEYDPNRSAYICKVHYKNG-----DKMYILHPRGVMIGDTILSGPKAPISIGNALPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLR--LPSGEVRLISENCSATIGQVGNITANNRSFGKAG--AKRWLGKRS---EVRGVAMNPVDHPHGGGEGRT 239          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 66/198 (33.33%), Postives = 99/198 (50.00%), Query Frame = 3
Query:   84 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 659
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++IP  C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGG
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGGG-----EKRYILHPRGALIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGG 232          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_SYNAS (50S ribosomal protein L2 OS=Syntrophus aciditrophicus (strain SB) GN=rplB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 66/186 (35.48%), Postives = 102/186 (54.84%), Query Frame = 3
Query:  102 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            ++R +DF      + G +A I +DP R A +A V++        +K   IA   +  G+ +  G++A +  GN +P+R+IP G+++ N+E  VG  G L R++G Y  +++   +    +V+LPSG  + I   CRA IGQV         + KAG    ++  KR   PKVRGV MNPV+HP GG
Sbjct:   61 RYRFIDFKREKLDVPGKIASIEYDPNRSARIALVSYEDG-----EKRYIIAPAKVAVGEKIVSGERADIKAGNAMPLRNIPVGSLIHNIELKVGKGGQLIRSAGTYGQLMA--KEGSYAQVRLPSGEMRKIFIDCRATIGQVGNNEHENISVGKAGRT--RWAGKR---PKVRGVVMNPVDHPMGG 234          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_SALTY (50S ribosomal protein L2 OS=Salmonella typhimurium GN=rplB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  105 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGG
Sbjct:   62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGG 234          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_SALTI (50S ribosomal protein L2 OS=Salmonella typhi GN=rplB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  105 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGG
Sbjct:   62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGG 234          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_SALSV (50S ribosomal protein L2 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  105 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGG
Sbjct:   62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGG 234          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_SALPK (50S ribosomal protein L2 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  105 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGG
Sbjct:   62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGG 234          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_SALPB (50S ribosomal protein L2 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  105 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGG
Sbjct:   62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGG 234          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_SALPA (50S ribosomal protein L2 OS=Salmonella paratyphi A GN=rplB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  105 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGG
Sbjct:   62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGG 234          
The following BLAST results are available for this feature:
BLAST of FC875311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_GEOSF4.174e-2332.8850S ribosomal protein L2 OS=Geobacter sp. (strain ... [more]
RK2_PICAB4.174e-2333.9650S ribosomal protein L2, chloroplastic OS=Picea a... [more]
RK2_MORIN4.174e-2333.3350S ribosomal protein L2, chloroplastic OS=Morus i... [more]
RL2_SYNAS5.451e-2335.4850S ribosomal protein L2 OS=Syntrophus aciditrophi... [more]
RL2_SALTY5.451e-2335.1450S ribosomal protein L2 OS=Salmonella typhimurium... [more]
RL2_SALTI5.451e-2335.1450S ribosomal protein L2 OS=Salmonella typhi GN=rp... [more]
RL2_SALSV5.451e-2335.1450S ribosomal protein L2 OS=Salmonella schwarzengr... [more]
RL2_SALPK5.451e-2335.1450S ribosomal protein L2 OS=Salmonella paratyphi A... [more]
RL2_SALPB5.451e-2335.1450S ribosomal protein L2 OS=Salmonella paratyphi B... [more]
RL2_SALPA5.451e-2335.1450S ribosomal protein L2 OS=Salmonella paratyphi A... [more]

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Properties
Property NameValue
Genbank descriptionC31402E09EF CTVClemen1 Citrus clementina cDNA clone C31402E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875311 ID=FC875311; Name=FC875311; organism=Citrus clementina; type=EST; length=690bp
GCTCTTTCGCCCTCTAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAG
GGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGC
CCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTG
TCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGA
GTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCAT
TGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAG
CCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGA
GCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGC
TAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATG
ACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGT
GGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAA
GCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAA
ACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCT
CATGGAGGAAGTAACACCAGCACATTGGTCATGCTAGCAC
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