FC875311
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_GEOSW (50S ribosomal protein L2 OS=Geobacillus sp. (strain WCH70) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20 Identity = 71/212 (33.49%), Postives = 102/212 (48.11%), Query Frame = 3 Query: 42 QRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 659 ++ G + K H+ G Q+R +DF + G VA I +DP R A +A + + +K IA + + G + G A + VGN LP+ +IP G V N+E G G L RA+G A ++ + V+L SG ++I CRA +G+V G + L+K G A R W P VRG MNPV+HPHGG Sbjct: 39 KKAGRNNQGKITVRHQGGGHKRQYRIIDFKRDKDGIPGRVATIEYDPNRSANIALIHYADG-----EKRYIIAPKNLKVGMEIMSGPDADIKVGNALPLENIPVGTFVHNIELKPGRGGQLVRAAGTSAQVL--GKEGKYVIVRLASGEVRMILGACRATVGEV---GNEQHELVKIGKA------GRARWLGIRPTVRGSVMNPVDHPHGG 234
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_FRATW (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20 Identity = 66/216 (30.56%), Postives = 104/216 (48.15%), Query Frame = 3 Query: 33 IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674 ++ + G + + H+ G +R +DF + V I +DP R A +A V + ++ +A +G+ V G+K + VGN +P+R+IP G V+ N+E + R++G +A ++ DN ++L SG + + CRA+IG V+ K L KAG + R P VRGVAMNPV+HPHGG T Sbjct: 37 VKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRT 240
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_FRATT (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20 Identity = 66/216 (30.56%), Postives = 104/216 (48.15%), Query Frame = 3 Query: 33 IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674 ++ + G + + H+ G +R +DF + V I +DP R A +A V + ++ +A +G+ V G+K + VGN +P+R+IP G V+ N+E + R++G +A ++ DN ++L SG + + CRA+IG V+ K L KAG + R P VRGVAMNPV+HPHGG T Sbjct: 37 VKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRT 240
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_FRATN (50S ribosomal protein L2 OS=Francisella tularensis subsp. novicida (strain U112) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20 Identity = 66/216 (30.56%), Postives = 104/216 (48.15%), Query Frame = 3 Query: 33 IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674 ++ + G + + H+ G +R +DF + V I +DP R A +A V + ++ +A +G+ V G+K + VGN +P+R+IP G V+ N+E + R++G +A ++ DN ++L SG + + CRA+IG V+ K L KAG + R P VRGVAMNPV+HPHGG T Sbjct: 37 VKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRT 240
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_FRATM (50S ribosomal protein L2 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20 Identity = 66/216 (30.56%), Postives = 104/216 (48.15%), Query Frame = 3 Query: 33 IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674 ++ + G + + H+ G +R +DF + V I +DP R A +A V + ++ +A +G+ V G+K + VGN +P+R+IP G V+ N+E + R++G +A ++ DN ++L SG + + CRA+IG V+ K L KAG + R P VRGVAMNPV+HPHGG T Sbjct: 37 VKKSKAGRNNTGRITVRHQGGGHKQHYRVVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRT 240
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_FRAT1 (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20 Identity = 66/216 (30.56%), Postives = 104/216 (48.15%), Query Frame = 3 Query: 33 IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674 ++ + G + + H+ G +R +DF + V I +DP R A +A V + ++ +A +G+ V G+K + VGN +P+R+IP G V+ N+E + R++G +A ++ DN ++L SG + + CRA+IG V+ K L KAG + R P VRGVAMNPV+HPHGG T Sbjct: 37 VKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRT 240
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_DELAS (50S ribosomal protein L2 OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20 Identity = 70/216 (32.41%), Postives = 105/216 (48.61%), Query Frame = 3 Query: 33 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHPHGGSNTST 674 I + KG G H HH +R +DF + V I +DP R A +A V + ++ IA + G + G +A + VGN LP+R+IP G+ + +E +G +AR++G A +++ + +V++ SG + + CRA IG+VA + + L KAG VKR P VRGV MNPV+HPHGG T Sbjct: 49 ITTRHKGGG-----HKHH------YRVVDFKRTKDGIPAKVERIEYDPNRTAHIALVCYADG-----ERRYIIAPRNLEVGATIVSGSEAPIRVGNTLPIRNIPVGSTIHCIELKIGAGAQIARSAGTSATLLAR--EGIYAQVRMRSGEVRKVHIECRATIGEVANEEHSLRRLGKAG-------VKRWMGIRPTVRGVVMNPVDHPHGGGEGKT 239
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_COLP3 (50S ribosomal protein L2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20 Identity = 62/190 (32.63%), Postives = 96/190 (50.53%), Query Frame = 3 Query: 105 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674 +R +DF + V + +DP R A +A V + ++ +A +G+ G + G A + GN +P+R+IP G+V+ +E G +ARA+G YA +++ D ++L SG + I S CRA +G++ + L KAG + R P VRGVAMNPV+HPHGG T Sbjct: 62 YRIVDFKRLKDGIPAKVERLEYDPNRSANIALVLYADG-----ERRYILAPKGLSAGDSILSGVGAPIKPGNTMPLRNIPLGSVIHAIELKPGKGAQIARAAGTYAQLVA--KDGAYVTLRLRSGEMRKIESDCRATLGEIGNSEHMLRSLGKAGASRW-----RGVRPTVRGVAMNPVDHPHGGGEGKT 239
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_CLOB6 (50S ribosomal protein L2 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20 Identity = 64/186 (34.41%), Postives = 94/186 (50.54%), Query Frame = 3 Query: 102 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659 ++R +DF + V I +DP R A +A V + +K IA G+ G V G ++ + VGN LP+R+IP G V+ N+E G L R++G+ A +++ + D ++V+LPSG + I CRA IG V+ + KAG H P VRG MNP +HPHGG Sbjct: 61 KYRIIDFKRNKDNIPAKVVSIEYDPNRTAFIALVVYADG-----EKRYIIAPVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTNEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGG 234
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_CHLPD (50S ribosomal protein L2 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplB PE=3 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20 Identity = 67/211 (31.75%), Postives = 104/211 (49.29%), Query Frame = 3 Query: 45 RKGAGSVFKSHTH--HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 659 R AG + H H++ +R +DF + VA I +DP R + +A + + +K +A +G+ G+ V G+K + GN +P+++IP G + NVE G G + R++G +AV+ + + D +KLPSG + + CRA IG V L KAG R+ W P+ RG+AMNPV+HP GG Sbjct: 43 RNRAGRITSRHMGGGHKR---HYRIIDFKRNKDGVPATVASIEYDPNRSSRIALLHYNDG-----EKRYILAPKGLKVGEKVESGEKVEIKTGNTMPLKNIPLGTDIHNVEMRAGKGGQIVRSAGAFAVLAAR--EGDYVTLKLPSGEIRKVRVECRATIGVVGNAEHENIVLGKAG---------RSRWLGIRPQTRGMAMNPVDHPMGG 234 The following BLAST results are available for this feature:
BLAST of FC875311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875311 ID=FC875311; Name=FC875311; organism=Citrus clementina; type=EST; length=690bpback to top |