FC875311

Overview
NameFC875311
Unique NameFC875311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12665 contig Ccv1_Contig12665:75..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_GEOSW (50S ribosomal protein L2 OS=Geobacillus sp. (strain WCH70) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 71/212 (33.49%), Postives = 102/212 (48.11%), Query Frame = 3
Query:   42 QRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 659
            ++ G  +  K    H+ G    Q+R +DF      + G VA I +DP R A +A + +        +K   IA + +  G  +  G  A + VGN LP+ +IP G  V N+E   G  G L RA+G  A ++    +     V+L SG  ++I   CRA +G+V   G  +  L+K G A       R  W    P VRG  MNPV+HPHGG
Sbjct:   39 KKAGRNNQGKITVRHQGGGHKRQYRIIDFKRDKDGIPGRVATIEYDPNRSANIALIHYADG-----EKRYIIAPKNLKVGMEIMSGPDADIKVGNALPLENIPVGTFVHNIELKPGRGGQLVRAAGTSAQVL--GKEGKYVIVRLASGEVRMILGACRATVGEV---GNEQHELVKIGKA------GRARWLGIRPTVRGSVMNPVDHPHGG 234          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_FRATW (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 66/216 (30.56%), Postives = 104/216 (48.15%), Query Frame = 3
Query:   33 IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674
            ++  + G  +  +    H+ G     +R +DF      +   V  I +DP R A +A V +        ++   +A +G+     V  G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGG    T
Sbjct:   37 VKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRT 240          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_FRATT (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 66/216 (30.56%), Postives = 104/216 (48.15%), Query Frame = 3
Query:   33 IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674
            ++  + G  +  +    H+ G     +R +DF      +   V  I +DP R A +A V +        ++   +A +G+     V  G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGG    T
Sbjct:   37 VKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRT 240          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_FRATN (50S ribosomal protein L2 OS=Francisella tularensis subsp. novicida (strain U112) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 66/216 (30.56%), Postives = 104/216 (48.15%), Query Frame = 3
Query:   33 IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674
            ++  + G  +  +    H+ G     +R +DF      +   V  I +DP R A +A V +        ++   +A +G+     V  G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGG    T
Sbjct:   37 VKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRT 240          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_FRATM (50S ribosomal protein L2 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 66/216 (30.56%), Postives = 104/216 (48.15%), Query Frame = 3
Query:   33 IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674
            ++  + G  +  +    H+ G     +R +DF      +   V  I +DP R A +A V +        ++   +A +G+     V  G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGG    T
Sbjct:   37 VKKSKAGRNNTGRITVRHQGGGHKQHYRVVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRT 240          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_FRAT1 (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 66/216 (30.56%), Postives = 104/216 (48.15%), Query Frame = 3
Query:   33 IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674
            ++  + G  +  +    H+ G     +R +DF      +   V  I +DP R A +A V +        ++   +A +G+     V  G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGG    T
Sbjct:   37 VKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRT 240          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_DELAS (50S ribosomal protein L2 OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 70/216 (32.41%), Postives = 105/216 (48.61%), Query Frame = 3
Query:   33 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHPHGGSNTST 674
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A V +        ++   IA   +  G  +  G +A + VGN LP+R+IP G+ +  +E  +G    +AR++G  A +++   +    +V++ SG  + +   CRA IG+VA    + + L KAG       VKR     P VRGV MNPV+HPHGG    T
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRTKDGIPAKVERIEYDPNRTAHIALVCYADG-----ERRYIIAPRNLEVGATIVSGSEAPIRVGNTLPIRNIPVGSTIHCIELKIGAGAQIARSAGTSATLLAR--EGIYAQVRMRSGEVRKVHIECRATIGEVANEEHSLRRLGKAG-------VKRWMGIRPTVRGVVMNPVDHPHGGGEGKT 239          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_COLP3 (50S ribosomal protein L2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 62/190 (32.63%), Postives = 96/190 (50.53%), Query Frame = 3
Query:  105 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTST 674
            +R +DF      +   V  + +DP R A +A V +        ++   +A +G+  G  +  G  A +  GN +P+R+IP G+V+  +E   G    +ARA+G YA +++   D     ++L SG  + I S CRA +G++       + L KAG +       R   P VRGVAMNPV+HPHGG    T
Sbjct:   62 YRIVDFKRLKDGIPAKVERLEYDPNRSANIALVLYADG-----ERRYILAPKGLSAGDSILSGVGAPIKPGNTMPLRNIPLGSVIHAIELKPGKGAQIARAAGTYAQLVA--KDGAYVTLRLRSGEMRKIESDCRATLGEIGNSEHMLRSLGKAGASRW-----RGVRPTVRGVAMNPVDHPHGGGEGKT 239          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_CLOB6 (50S ribosomal protein L2 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 64/186 (34.41%), Postives = 94/186 (50.54%), Query Frame = 3
Query:  102 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            ++R +DF      +   V  I +DP R A +A V +        +K   IA  G+  G  V  G ++ + VGN LP+R+IP G V+ N+E   G    L R++G+ A +++   + D ++V+LPSG  + I   CRA IG V+        + KAG   H         P VRG  MNP +HPHGG
Sbjct:   61 KYRIIDFKRNKDNIPAKVVSIEYDPNRTAFIALVVYADG-----EKRYIIAPVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTNEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGG 234          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_CHLPD (50S ribosomal protein L2 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplB PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 67/211 (31.75%), Postives = 104/211 (49.29%), Query Frame = 3
Query:   45 RKGAGSVFKSHTH--HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 659
            R  AG +   H    H++    +R +DF      +   VA I +DP R + +A + +        +K   +A +G+  G+ V  G+K  +  GN +P+++IP G  + NVE   G  G + R++G +AV+ +   + D   +KLPSG  + +   CRA IG V         L KAG         R+ W    P+ RG+AMNPV+HP GG
Sbjct:   43 RNRAGRITSRHMGGGHKR---HYRIIDFKRNKDGVPATVASIEYDPNRSSRIALLHYNDG-----EKRYILAPKGLKVGEKVESGEKVEIKTGNTMPLKNIPLGTDIHNVEMRAGKGGQIVRSAGAFAVLAAR--EGDYVTLKLPSGEIRKVRVECRATIGVVGNAEHENIVLGKAG---------RSRWLGIRPQTRGMAMNPVDHPMGG 234          
The following BLAST results are available for this feature:
BLAST of FC875311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_GEOSW1.137e-2033.4950S ribosomal protein L2 OS=Geobacillus sp. (strai... [more]
RL2_FRATW1.137e-2030.5650S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATT1.137e-2030.5650S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATN1.137e-2030.5650S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATM1.137e-2030.5650S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRAT11.137e-2030.5650S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_DELAS1.137e-2032.4150S ribosomal protein L2 OS=Delftia acidovorans (s... [more]
RL2_COLP31.137e-2032.6350S ribosomal protein L2 OS=Colwellia psychrerythr... [more]
RL2_CLOB61.137e-2034.4150S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_CHLPD1.137e-2031.7550S ribosomal protein L2 OS=Chlorobium phaeobacter... [more]

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Properties
Property NameValue
Genbank descriptionC31402E09EF CTVClemen1 Citrus clementina cDNA clone C31402E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875311 ID=FC875311; Name=FC875311; organism=Citrus clementina; type=EST; length=690bp
GCTCTTTCGCCCTCTAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAG
GGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGC
CCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTG
TCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGA
GTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCAT
TGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAG
CCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGA
GCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGC
TAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATG
ACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGT
GGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAA
GCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAA
ACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCT
CATGGAGGAAGTAACACCAGCACATTGGTCATGCTAGCAC
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