FC875311

Overview
NameFC875311
Unique NameFC875311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12665 contig Ccv1_Contig12665:75..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.578e-36
Identity = 86/214 (40.19%), Postives = 118/214 (55.14%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            MG  I+ Q +G G   +++ +H  K  A+ + L  G     ++GV+ +I HDP R  P+A V      +    K   +  EG+  G  V  G +A +  GN LP+  IP G+ +CN+E   GD G   RASG  A+II    D     VK+PSG  K   S C A +G VAGGGR EKP +KAG  +HK + +   WP+VRGVAMN ++HP GG
Sbjct:    1 MGHRIKTQNRGRGGPTYRAPSHQYK--AELKHL--GNDKVTVRGVIIDIEHDPARHTPIALVRLEGEGK----KVYLLVTEGLGVGDQVAWGPEAEVKNGNTLPISKIPTGSYICNIEARPGDGGKFVRASGVQAIIIDKTVDR--VGVKMPSGKMKWFSSRCLATVGVVAGGGRGEKPFVKAGKKFHKVKSQATYWPRVRGVAMNVIDHPFGG 204          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.634e-35
Identity = 85/214 (39.72%), Postives = 117/214 (54.67%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            MG  I  Q +G G   +++ +H  K   +     FG     ++  V +I HDP R  P+A V      +   +KE  +  EG+  GQ +  G +AT++ GN LP+ +IP G  VCN+E   GD G   R+SG  AVII  +       V++PSG  K     C A +G VAGGGR +KP+LKAG  YHK +     WP+VRGVAMN ++HP GG
Sbjct:    1 MGHRISTQSRGKGGPTYRAPSHQYKAELKH----FGSALETVRATVIDIEHDPARHTPIAVVKIEG--KASDKKEYALITEGVGIGQELVWGPEATVVNGNSLPLSAIPTGVAVCNIEARPGDGGKFVRSSGVQAVIIGKSAGK--VGVRMPSGKPKWFNEACLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDHPFGG 206          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.059e-34
Identity = 83/214 (38.79%), Postives = 120/214 (56.07%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            MG+ +  QR G G++ F++    R G  ++ ++      G+    V +I+H+PG   P+A+V      ++        A +G+ +GQ +  G+ +   +GN++P + +PEG  V NVE H GD G  AR +G YA+++  +      R  LPSG  K I       +G VAGGG  EKPLLKAGN Y K++VK   WP VRGVAMN V HPHGG
Sbjct:    1 MGKKLLQQRAGRGNINFRNPGWLRVGKVRYPTI-----TGHHIAKVVDILHNPGMTEPVAKVKLDTGIQFF-----IPAVQGLISGQKIEVGEGSPASLGNIVPAKDLPEGVYVSNVELHRGDGGRYARTAGSYAIVVGKSEGKVILR--LPSGKIKEIDENALVTVGTVAGGGVLEKPLLKAGNNYWKYKVKATKWPDVRGVAMNVVSHPHGG 202          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 81/214 (37.85%), Postives = 115/214 (53.74%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            MG  I  Q +G G   +++ +H  K   +      G+    + G + +I HDP R AP+A V           K   +  EG+  G+ V  G    +  GN LP++SIP G+ +CN+E    D G   R++G  AV++  +   D   V++PSG  K   + CRA +G VAGGGR EKP +KAGN  HK R   + WP+VRGVAMN ++HP GG
Sbjct:    1 MGHRITTQNRGRGGPTYRAPSHRYKAALKH----IGDGTKSISGSIIDIEHDPARNAPIALVQLEDG-----SKVYILVTEGIGIGETVAWGADVKVKNGNTLPLQSIPTGSYICNIESRPNDGGKFVRSTGVQAVVV--DKIGDRIGVRMPSGKTKWFNARCRATVGIVAGGGRVEKPFVKAGNKSHKMRNTASNWPRVRGVAMNVIDHPFGG 203          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.439e-31
Identity = 84/219 (38.36%), Postives = 118/219 (53.88%), Query Frame = 3
Query:   21 MGRV-IRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSNTS 671
            MG+V +  QR+G GS  F+S TH   G  +  + D       +KG V  +I D    APL  V + +       + L  A  G+  G  VY GK+A   +G++ P+  IPEG  +  +E++ GD G L RASGD+A+++      D   V+LPSG  K + +  RA+IG +AGGGR EKP +KAGN Y+    +   WP V GV  N  +HP GG   S
Sbjct:    1 MGKVRLLVQRRGRGSPTFRSPTHRAAGKVKIPTFD----GDLVKGKVVALIKDSIHYAPLMVVKWENG-----AQSLLPAPLGISVGDTVYYGKEAPNAIGSIKPLSEIPEGTKIYMLENNPGDGGKLVRASGDFALLVQKL--GDKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDHPFGGKRHS 208          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.277e-31
Identity = 76/211 (36.02%), Postives = 107/211 (50.71%), Query Frame = 3
Query:   27 RVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            R+I   R   G  +++ +H  K   +      G+ +  + G V +I HDP R AP+A            +K   +A EG+  G  V  G   T+  GN LP+  IP GA VCN+E    D G   R+SG  A++I    D+    +++PSG  K     C A +G VAGGGR EKP +KAG  +   R     WP+V+GV MN ++HP GG
Sbjct:    4 RIIAQNRGKGGPTYRAPSHRYKAALRHA----GKNDALVSGNVIDIEHDPARHAPIALARLDSG-----EKIYVLATEGLGVGDTVSWGTGGTVKNGNTLPLGEIPVGAYVCNIEARPNDGGKFVRSSGVQALVIG-KADDGRVGIRMPSGKNKWFNGACMATVGIVAGGGRGEKPFVKAGKKHFHVRSSSERWPRVKGVCMNVIDHPFGG 204          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.067e-30
Identity = 78/214 (36.45%), Postives = 108/214 (50.47%), Query Frame = 3
Query:   21 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            MG  I  Q +G  G  +++ +H  K   +      G     +   + +I HDP R  P+A V          +    +  EGM  G  +  G  A +  GN LP++ IP G+ VCN+E +  D G   RASG  A +           V++PSG+ K     CRA IG VAGGGR+EKP +KAG  YHK +   + WP+VRG AMN ++HP GG
Sbjct:    1 MGHRITTQSRGHGGPTYRAPSHRYKAALKH----LGRAGETVSYKIIDIEHDPARHTPIALVDVPDG-----ENTYVLVTEGMGIGDVLTWGADAEIRNGNTLPLQEIPTGSSVCNIEAYPNDGGKFVRASGVQATVTDKMEGR--VAVRMPSGSTKWFNGQCRATIGIVAGGGRSEKPFVKAGKKYHKMKNTASNWPRVRGFAMNVIDHPFGG 203          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.067e-30
Identity = 76/214 (35.51%), Postives = 117/214 (54.67%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            MG+    +R+G G + F++ T  +   A++ + + GE+    +G V +++H+ GR APLA++ F              A  G   G  +  G K+ +  GNV+ V++IP+G  VCNVE H GD G + +++G  A + SH        +KLPSG    +    RAM+G +AGGG +E+P + AG  + +FR K   +P VRGVA     HPHGG
Sbjct:    1 MGKRPLVRRRGRGGMQFRAATTGKIARAKYPAFELGEQR---EGTVIDLVHERGRDAPLAKIRFEDGI-----VSYVPAVLGTRVGSSMNFGLKSEIRDGNVISVQNIPDGTTVCNVEKHYGDGGAIVKSAGGNATVFSHGEGGVV--LKLPSGRFSTLNPKNRAMVGTLAGGGVSERPFMSAGGKWRRFRSKGRKYPIVRGVAQAAYVHPHGG 204          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 76/215 (35.35%), Postives = 118/215 (54.88%), Query Frame = 3
Query:   21 MGRVIRAQRKG-AGSVFKSHTHHRKGP-AQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 659
            MG+    +R+G  G+ F+S +  + G  A +      E++   +G + +++H+ GR APLA+V F              A  G   G+ +  G K+ +  GNV+ +++IP+G +VCN+E H GD G + +++G  A + SH  +  T  VKLPSG    +    RAMIG +AGGG +E+P + AG  +  F+ K   +P VRGVA     HPHGG
Sbjct:    1 MGKRPLVRRRGRGGNQFRSTSTGKVGTKANYPRFPLSEQH---EGEIIDLVHERGREAPLAKVRFEDG-----SVSFVPAVLGAKVGETLQFGLKSKIEKGNVISIQNIPDGTIVCNIEKHFGDGGAIVKSAGTDATVFSHGDEGVT--VKLPSGKFTTLNPKNRAMIGTLAGGGASERPFMSAGGKWRNFKAKGKKYPIVRGVAQAAYVHPHGG 205          
BLAST of FC875311 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.934e-28
Identity = 82/216 (37.96%), Postives = 111/216 (51.39%), Query Frame = 3
Query:   21 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGSN 665
            MG+ I  QR+G GS V++S +H        + L  GE       VV +IIH PGR +PL  +          +K   IA  G Y GQ +  G   T+  G    + +IP+G+ V N+E   GD G   R++G +A+++SH        +KLPSG+ +     CRA +G VA  G  + P+LKAG   H  R K      VRGVAMN V HPHGG N
Sbjct:    1 MGKHIIPQRRGHGSLVYRSPSHRHV--VDVKHLKPGEY------VVKDIIHAPGRNSPLLELVDS-----TGKKVYQIAFTGAYVGQKIVAGNVDTINPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHG---SRVTLKLPSGSMRDFDPRCRATVGVVAASGIIDAPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGN 200          
The following BLAST results are available for this feature:
BLAST of FC875311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METPE9.578e-3640.1950S ribosomal protein L2P OS=Methanosphaerula palu... [more]
RL2_METLZ1.634e-3539.7250S ribosomal protein L2P OS=Methanocorpusculum la... [more]
RL2_METS51.059e-3438.7950S ribosomal protein L2P OS=Metallosphaera sedula... [more]
RL2_METB65.256e-3437.8550S ribosomal protein L2P OS=Methanoregula boonei ... [more]
RL2_NANEQ5.439e-3138.3650S ribosomal protein L2P OS=Nanoarchaeum equitans... [more]
RL2_METMJ9.277e-3136.0250S ribosomal protein L2P OS=Methanoculleus marisn... [more]
RL2_METHJ2.067e-3036.4550S ribosomal protein L2P OS=Methanospirillum hung... [more]
RL2_CENSY2.067e-3035.5150S ribosomal protein L2P OS=Cenarchaeum symbiosum... [more]
RL2_NITMS1.026e-2935.3550S ribosomal protein L2P OS=Nitrosopumilus mariti... [more]
RL2_THEVO1.934e-2837.9650S ribosomal protein L2P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionC31402E09EF CTVClemen1 Citrus clementina cDNA clone C31402E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875311 ID=FC875311; Name=FC875311; organism=Citrus clementina; type=EST; length=690bp
GCTCTTTCGCCCTCTAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAG
GGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGC
CCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTG
TCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGA
GTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCAT
TGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAG
CCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGA
GCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGC
TAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATG
ACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGT
GGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAA
GCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAA
ACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCT
CATGGAGGAAGTAACACCAGCACATTGGTCATGCTAGCAC
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