FC875314
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_DECAR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Dechloromonas aromatica (strain RCB) GN=ispF PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30 Identity = 61/124 (49.19%), Postives = 85/124 (68.55%), Query Frame = 1 Query: 313 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684 FRVG G+D+H+L G LI+GG+ +PH G HSD D LLH + DA+LGA+ L DIG+ FPD+DP++KGA S V ++ AV L+ E G+ N+DATLI +PKL+P+ + N++ LG P Sbjct: 3 FRVGQGYDVHKLVDGRKLILGGVEIPHPTGLLGHSDADALLHAITDALLGAVALGDIGRHFPDTDPRYKGADSRVLLRAAVALLAERGWRPVNVDATLIAQQPKLAPHAVAMVANVAADLGISP 126
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_ANASP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=ispF PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30 Identity = 57/126 (45.24%), Postives = 86/126 (68.25%), Query Frame = 1 Query: 307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684 + R+G+G+D+HRL LI+GG+++PHE G HSD DVL H ++DA+LGAL L DIG FP +DP+W GA S V + + L+ G+ IGN+D+ ++ RPKL P+ +T+R L+++L +P Sbjct: 3 MSIRIGNGYDIHRLVSDRALILGGVHIPHELGLLGHSDADVLTHAIMDAMLGALSLGDIGHYFPPTDPQWAGADSLVLLSQVNELIRTQGWRIGNIDSVVVAERPKLKPHIKTMRDKLADILQLEP 128
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_PARL1 (Bifunctional enzyme ispD/ispF OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=ispDF PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30 Identity = 57/122 (46.72%), Postives = 81/122 (66.39%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 R G G+D+HR PG + + G+ VPH+ G HSD D LH + DA+LGA+G DIG+ FP SDPKWKGAPS +F+ A +L EAG + N+D TLI PK+ P+ + +R ++++LG + Sbjct: 227 RTGLGYDVHRFGPGDYVWLCGVKVPHDAGLVGHSDADAGLHAITDAVLGAIGAGDIGRHFPPSDPKWKGAPSEIFLAHAAKLATEAGARVSNVDVTLICELPKIGPHADAMRARIADILGIE 348
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_DEIRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Deinococcus radiodurans GN=ispF PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29 Identity = 62/124 (50.00%), Postives = 83/124 (66.94%), Query Frame = 1 Query: 307 LPFRVGHGFDLHRLEPGYPLIIGGINVPH-ERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675 LPFR+G+G D HRL PG PL++GG+ +PH E G AHSDGD +LH V DA+L L L DIGQ FPD+ +WKG S + +A+ L++E GY N+ + L RPKL P + I +++ELLG Sbjct: 4 LPFRIGYGEDAHRLAPGLPLVLGGVAIPHAELGAVAHSDGDAVLHAVADALLSGLALGDIGQYFPDTAAEWKGMDSRRILAKALELVEERGYRPVNVALVVTLDRPKLGPLRADIAASVAELLG 127
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BORPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=ispF PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29 Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 1 Query: 307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 +PFRVG G+D+H L G PLIIGG+ +PH G + HSD DVLLH V DA+LGA GL DIG+ FPD+DP ++GA S V +++AV + AG+ N+DAT+ PK+ P+ + N++ G D Sbjct: 3 VPFRVGQGYDVHALVAGRPLIIGGVTIPHTHGLQGHSDADVLLHAVTDALLGAAGLGDIGRHFPDTDPAYRGADSRVLLRDAVAKVRAAGWAPVNIDATVHAQAPKIGPHAGAMVANIAADAGID 127
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_AZOSB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azoarcus sp. (strain BH72) GN=ispF PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29 Identity = 62/124 (50.00%), Postives = 83/124 (66.94%), Query Frame = 1 Query: 310 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 PFRVG GFD+H L PG LI+GG+++P G HSD DVLLH + DA+LGA GL DIG++FPD+DP GA S V ++EA + AG+E N+DATLI P++ P+ + N++ LG D Sbjct: 4 PFRVGQGFDVHALVPGRALIVGGVDIPFSAGLLGHSDADVLLHALTDALLGAAGLGDIGRLFPDTDPAHAGADSRVLLREAYARVKAAGWEAVNVDATLICRAPRILPHAPAMVVNIAADLGMD 127
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_ACTSZ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=ispF PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29 Identity = 58/117 (49.57%), Postives = 83/117 (70.94%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666 R+GHGFD+H L PLIIGG+ VP+ G AHSDGDV+LH + DA+LGA+ L DIG++FPD+D ++K S + ++EA R + E GY +GN+D T+I PK+ PY + +R ++E Sbjct: 3 RIGHGFDVHALGEARPLIIGGVKVPYHTGFIAHSDGDVVLHALTDALLGAVALGDIGKLFPDTDMQFKDIDSRILLREAFRRVKEKGYAVGNVDVTIIAQAPKMRPYIDAMRAVIAE 119
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_VIBVU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio vulnificus GN=ispF PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29 Identity = 59/122 (48.36%), Postives = 83/122 (68.03%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 R+GHGFD+H+ P+IIGG+ VP+E+G AHSDGDV LH + DA+LGA+ DIG+ FPD+D KWKG S +K+ R + E GY++GN D T+I PK++PY + +R ++ L D Sbjct: 3 RIGHGFDVHKFGGEGPVIIGGVAVPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGVDSRELLKDVYRRVKEQGYKLGNADVTIIAQAPKMAPYIDAMREAIAHDLETD 124
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PSEMY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas mendocina (strain ymp) GN=ispF PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29 Identity = 57/122 (46.72%), Postives = 87/122 (71.31%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA+ L DIG+ FPD+DP +KGA S ++ + L+ GY +GN+DAT+I PK++P+ +++R ++E LG + Sbjct: 2 RIGHGYDVHRFGEGDFITLGGVRIPHKFGLVAHSDGDVLLHALSDALLGAVALGDIGKHFPDTDPTFKGADSRALLRHVMSLVRGKGYAVGNVDATIIAQAPKMAPHIQSMRERIAEDLGVE 123
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_HAEIN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus influenzae GN=ispF PE=1 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29 Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 R+GHGFD+H PLIIGG+ VP+ G AHSDGDV LH + DAILGA L DIG++FPD+D ++K A S ++EA R + E GY+IGN+D T+I PK+ P+ + +R ++E L D Sbjct: 3 RIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLFPDTDMQYKNADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQCD 124 The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bpback to top |