FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_DECAR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Dechloromonas aromatica (strain RCB) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 61/124 (49.19%), Postives = 85/124 (68.55%), Query Frame = 1
Query:  313 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            FRVG G+D+H+L  G  LI+GG+ +PH  G   HSD D LLH + DA+LGA+ L DIG+ FPD+DP++KGA S V ++ AV L+ E G+   N+DATLI  +PKL+P+   +  N++  LG  P
Sbjct:    3 FRVGQGYDVHKLVDGRKLILGGVEIPHPTGLLGHSDADALLHAITDALLGAVALGDIGRHFPDTDPRYKGADSRVLLRAAVALLAERGWRPVNVDATLIAQQPKLAPHAVAMVANVAADLGISP 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_ANASP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 57/126 (45.24%), Postives = 86/126 (68.25%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            +  R+G+G+D+HRL     LI+GG+++PHE G   HSD DVL H ++DA+LGAL L DIG  FP +DP+W GA S V + +   L+   G+ IGN+D+ ++  RPKL P+ +T+R  L+++L  +P
Sbjct:    3 MSIRIGNGYDIHRLVSDRALILGGVHIPHELGLLGHSDADVLTHAIMDAMLGALSLGDIGHYFPPTDPQWAGADSLVLLSQVNELIRTQGWRIGNIDSVVVAERPKLKPHIKTMRDKLADILQLEP 128          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_PARL1 (Bifunctional enzyme ispD/ispF OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=ispDF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 57/122 (46.72%), Postives = 81/122 (66.39%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R G G+D+HR  PG  + + G+ VPH+ G   HSD D  LH + DA+LGA+G  DIG+ FP SDPKWKGAPS +F+  A +L  EAG  + N+D TLI   PK+ P+ + +R  ++++LG +
Sbjct:  227 RTGLGYDVHRFGPGDYVWLCGVKVPHDAGLVGHSDADAGLHAITDAVLGAIGAGDIGRHFPPSDPKWKGAPSEIFLAHAAKLATEAGARVSNVDVTLICELPKIGPHADAMRARIADILGIE 348          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_DEIRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Deinococcus radiodurans GN=ispF PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29
Identity = 62/124 (50.00%), Postives = 83/124 (66.94%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPH-ERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            LPFR+G+G D HRL PG PL++GG+ +PH E G  AHSDGD +LH V DA+L  L L DIGQ FPD+  +WKG  S   + +A+ L++E GY   N+   + L RPKL P +  I  +++ELLG
Sbjct:    4 LPFRIGYGEDAHRLAPGLPLVLGGVAIPHAELGAVAHSDGDAVLHAVADALLSGLALGDIGQYFPDTAAEWKGMDSRRILAKALELVEERGYRPVNVALVVTLDRPKLGPLRADIAASVAELLG 127          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BORPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +PFRVG G+D+H L  G PLIIGG+ +PH  G + HSD DVLLH V DA+LGA GL DIG+ FPD+DP ++GA S V +++AV  +  AG+   N+DAT+    PK+ P+   +  N++   G D
Sbjct:    3 VPFRVGQGYDVHALVAGRPLIIGGVTIPHTHGLQGHSDADVLLHAVTDALLGAAGLGDIGRHFPDTDPAYRGADSRVLLRDAVAKVRAAGWAPVNIDATVHAQAPKIGPHAGAMVANIAADAGID 127          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_AZOSB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azoarcus sp. (strain BH72) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29
Identity = 62/124 (50.00%), Postives = 83/124 (66.94%), Query Frame = 1
Query:  310 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            PFRVG GFD+H L PG  LI+GG+++P   G   HSD DVLLH + DA+LGA GL DIG++FPD+DP   GA S V ++EA   +  AG+E  N+DATLI   P++ P+   +  N++  LG D
Sbjct:    4 PFRVGQGFDVHALVPGRALIVGGVDIPFSAGLLGHSDADVLLHALTDALLGAAGLGDIGRLFPDTDPAHAGADSRVLLREAYARVKAAGWEAVNVDATLICRAPRILPHAPAMVVNIAADLGMD 127          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_ACTSZ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29
Identity = 58/117 (49.57%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666
            R+GHGFD+H L    PLIIGG+ VP+  G  AHSDGDV+LH + DA+LGA+ L DIG++FPD+D ++K   S + ++EA R + E GY +GN+D T+I   PK+ PY + +R  ++E
Sbjct:    3 RIGHGFDVHALGEARPLIIGGVKVPYHTGFIAHSDGDVVLHALTDALLGAVALGDIGKLFPDTDMQFKDIDSRILLREAFRRVKEKGYAVGNVDVTIIAQAPKMRPYIDAMRAVIAE 119          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_VIBVU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio vulnificus GN=ispF PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29
Identity = 59/122 (48.36%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+GHGFD+H+     P+IIGG+ VP+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKG  S   +K+  R + E GY++GN D T+I   PK++PY + +R  ++  L  D
Sbjct:    3 RIGHGFDVHKFGGEGPVIIGGVAVPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGVDSRELLKDVYRRVKEQGYKLGNADVTIIAQAPKMAPYIDAMREAIAHDLETD 124          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PSEMY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas mendocina (strain ymp) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29
Identity = 57/122 (46.72%), Postives = 87/122 (71.31%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA+ L DIG+ FPD+DP +KGA S   ++  + L+   GY +GN+DAT+I   PK++P+ +++R  ++E LG +
Sbjct:    2 RIGHGYDVHRFGEGDFITLGGVRIPHKFGLVAHSDGDVLLHALSDALLGAVALGDIGKHFPDTDPTFKGADSRALLRHVMSLVRGKGYAVGNVDATIIAQAPKMAPHIQSMRERIAEDLGVE 123          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_HAEIN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus influenzae GN=ispF PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+GHGFD+H      PLIIGG+ VP+  G  AHSDGDV LH + DAILGA  L DIG++FPD+D ++K A S   ++EA R + E GY+IGN+D T+I   PK+ P+ + +R  ++E L  D
Sbjct:    3 RIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLFPDTDMQYKNADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQCD 124          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_DECAR7.989e-3049.192-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ANASP7.989e-3045.242-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_PARL17.989e-3046.72Bifunctional enzyme ispD/ispF OS=Parvibaculum lava... [more]
ISPF_DEIRA1.043e-2950.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BORPD1.043e-2948.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AZOSB1.043e-2950.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ACTSZ1.043e-2949.572-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_VIBVU1.363e-2948.362-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEMY1.363e-2946.722-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_HAEIN1.363e-2950.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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