FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_HAEIE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus influenzae (strain PittEE) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+GHGFD+H      PLIIGG+ VP+  G  AHSDGDV LH + DAILGA  L DIG++FPD+D ++K A S   ++EA R + E GY+IGN+D T+I   PK+ P+ + +R  ++E L  D
Sbjct:    3 RIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLFPDTDMQYKNADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQCD 124          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_YERE8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 62/119 (52.10%), Postives = 85/119 (71.43%), Query Frame = 1
Query:  316 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666
            R+GHGFD+H+  E G  PLIIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GNLD T+I   PK++P+   +R +L+E
Sbjct:    2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRALLREAYRRILAKGYRLGNLDITIIAQAPKMAPHIPQMRVHLAE 120          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PHOPR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Photobacterium profundum GN=ispF PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 58/122 (47.54%), Postives = 84/122 (68.85%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+GHGFD+H+     P+IIGG+ +P+E+G  AHSDGDV LH V DA+LGA+G  DIG+ FPD+D +WKGA S   +++    + + GY +GNLD T+I   PK++PY + +   ++E L  D
Sbjct:    2 RIGHGFDVHKFGGEGPVIIGGVAIPYEQGLIAHSDGDVALHAVCDALLGAIGAGDIGRHFPDTDAEWKGADSRFLLRDVYSKVKDKGYRLGNLDVTIIAQAPKMAPYIDAMCQAIAEDLETD 123          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_FUSNN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Fusobacterium nucleatum subsp. nucleatum GN=ispF PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 57/119 (47.90%), Postives = 86/119 (72.27%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            R+G+G+D+H+L  G  L++GG+ VPH +G   HSDGDVLLH + DAI+GALGL DIG  FPD+D   K   S++ +K+   +M E  Y+I NLD+ +++ +PKL PY ++IR N++++L
Sbjct:    3 RIGNGYDVHKLVEGRKLMLGGVEVPHTKGVLGHSDGDVLLHAITDAIIGALGLGDIGLHFPDNDENLKDIDSAILLKKINNIMKEKNYKIVNLDSIIVMQKPKLRPYIDSIRDNIAKIL 121          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_ENTFA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Enterococcus faecalis GN=ispF PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 57/116 (49.14%), Postives = 83/116 (71.55%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLS 663
            R+G GFD+H+L P  PLIIGG+ +P+E+G   HSD DVL H ++DAILGA GL DIGQ+FP++DP++K A S   +K+    +  +G+ IGN+D T++   PK+SPY   ++ NL+
Sbjct:    3 RIGQGFDVHQLVPQRPLIIGGVTLPYEKGLLGHSDADVLTHAIIDAILGAAGLGDIGQLFPETDPQFKNANSVNLLKKVNEKVGRSGFTIGNIDCTILAEEPKMSPYLAEMKKNLA 118          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CLOAB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Clostridium acetobutylicum GN=ispF PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 59/122 (48.36%), Postives = 86/122 (70.49%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            RVG G+D+H+L     LI+GG+ + + +G   HSD DVL+H ++D+ILGA GL DIG++FPDSD K+KG  S   +KE   L+ + GY+IGN+D+T+I  +PK+SPY E I+ +L  +L  D
Sbjct:    2 RVGIGYDVHKLVENRKLILGGVEIQYSKGLLGHSDADVLVHAIIDSILGAAGLGDIGKLFPDSDNKYKGISSLKLLKEVNALIKDKGYKIGNIDSTIIAQKPKISPYIEDIKKSLCNVLDID 123          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BURM1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 60/123 (48.78%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            + FR+G G+D+H+L  G PLIIGG+++P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+D  +KGA S V ++E V  +  AG+ I N+D+T+I   PKL+P+ E +R N++  LG
Sbjct:    1 MDFRIGQGYDVHQLVAGRPLIIGGVSIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDAAFKGADSRVLLRECVARVKAAGFAIQNVDSTVIAQAPKLAPHIEAMRANIAADLG 123          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_AZOVD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 56/117 (47.86%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666
            R+GHG+D+HR   G  + +GG+ +PH  G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KG  S V ++  V L+ E G+ +GN+DAT++   PK++P+ E +R +++E
Sbjct:    2 RIGHGYDVHRFAEGDFVTLGGVRIPHRFGLLAHSDGDVLLHALCDALLGAAALGDIGRHFPDTDPRFKGVDSRVLLRHVVALVREKGWRVGNVDATIVAQAPKMAPHIERMRLSIAE 118          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_ANAVT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 57/126 (45.24%), Postives = 85/126 (67.46%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            +  R+G+G+D+HRL     LI+GG+++PHE G   HSD DVL H ++DA+LGAL L DIG  FP +DP+W GA S V + +   L+   G+ IGN+D+ ++  RPKL P+ +T+R  L+ +L  +P
Sbjct:    3 MSIRIGNGYDIHRLVSDRALILGGVHIPHELGLLGHSDADVLTHAIMDAMLGALSLGDIGHYFPPTDPQWAGADSLVLLNQVNELIRAQGWRIGNIDSVVVAERPKLKPHIKTMRDKLANVLQLEP 128          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_VIBCM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 59/122 (48.36%), Postives = 82/122 (67.21%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+GHGFD+HR     P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R +   GY +GN D T+I   PK++PY + +   ++E L  D
Sbjct:    3 RIGHGFDVHRFGGEGPIIIGGVKIPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKAQGYVLGNADVTIIAQAPKMAPYIQAMCAAIAEDLETD 124          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_HAEIE1.363e-2950.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_YERE81.780e-2952.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PHOPR1.780e-2947.542-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FUSNN1.780e-2947.902-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ENTFA1.780e-2949.142-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CLOAB1.780e-2948.362-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURM11.780e-2948.782-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AZOVD1.780e-2947.862-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ANAVT1.780e-2945.242-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_VIBCM2.324e-2948.362-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
back to top