FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_VIBCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio cholerae GN=ispF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 59/122 (48.36%), Postives = 82/122 (67.21%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+GHGFD+HR     P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R +   GY +GN D T+I   PK++PY + +   ++E L  D
Sbjct:    3 RIGHGFDVHRFGGEGPIIIGGVKIPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKAQGYVLGNADVTIIAQAPKMAPYIQAMCAAIAEDLETD 124
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_VIBC3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 59/122 (48.36%), Postives = 82/122 (67.21%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+GHGFD+HR     P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R +   GY +GN D T+I   PK++PY + +   ++E L  D
Sbjct:    3 RIGHGFDVHRFGGEGPIIIGGVKIPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKAQGYVLGNADVTIIAQAPKMAPYIQAMCAAIAEDLETD 124
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SHESR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella sp. (strain MR-7) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +  R+GHGFD+H+     PLI+ G+ VP+E G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+D  +KGA S V ++    L    G+E+GNLD T+I   PK++P+ E +R  L+  L AD
Sbjct:    1 MKIRIGHGFDVHKFGEARPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLRHCYALARAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNAD 125
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SHESM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella sp. (strain MR-4) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +  R+GHGFD+H+     PLI+ G+ VP+E G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+D  +KGA S V ++    L    G+E+GNLD T+I   PK++P+ E +R  L+  L AD
Sbjct:    1 MKIRIGHGFDVHKFGEARPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLRHCYALARAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNAD 125
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SHESA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella sp. (strain ANA-3) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +  R+GHGFD+H+     PLI+ G+ VP+E G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+D  +KGA S V ++    L    G+E+GNLD T+I   PK++P+ E +R  L+  L AD
Sbjct:    1 MKIRIGHGFDVHKFGEARPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLRHCYALARAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNAD 125
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MANSM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666
            R+GHGFD+H      PLIIGG+ VP+  G  AHSDGDV LH + DA+LGAL L DIG++FPD+D ++K   S + ++EA R + E GY+IGN+D T+I   PK+ P+ + +R  ++E
Sbjct:    3 RIGHGFDVHAFGEARPLIIGGVEVPYHTGFIAHSDGDVALHALTDALLGALALGDIGKLFPDTDMQFKNIDSRILLREAFRRVQEKGYKIGNVDVTIIAQAPKMRPHIDAMRAVIAE 119
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_HAEIG (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus influenzae (strain PittGG) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 60/122 (49.18%), Postives = 83/122 (68.03%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+GHGFD+H      PLIIGG+ VP+  G  AHSDGDV LH + DAILGA  L DIG++FPD+D ++K A S   ++EA R + E GY+IGN+D T+I   PK+ P+ + +R  ++E +  D
Sbjct:    3 RIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLFPDTDMQYKNADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDIQCD 124
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_DESHY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Desulfitobacterium hafniense (strain Y51) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 58/122 (47.54%), Postives = 85/122 (69.67%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            RVG G+D+H L  G PLI+ GI++PHE+G   HSD DVL H ++DA+LGAL L D+G+ FPD+D +++G  S   +++ ++L++E GY IGN+D  +   RPKL+PY   +R NL+  L  D
Sbjct:    3 RVGIGYDVHALVAGRPLILAGIDIPHEKGLLGHSDADVLTHTLMDALLGALALGDLGKHFPDTDERYRGISSMKLLEQVMKLLEERGYAIGNIDCIIAAQRPKLAPYIPQMRENLARALKTD 124
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_DESHD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 58/122 (47.54%), Postives = 85/122 (69.67%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            RVG G+D+H L  G PLI+ GI++PHE+G   HSD DVL H ++DA+LGAL L D+G+ FPD+D +++G  S   +++ ++L++E GY IGN+D  +   RPKL+PY   +R NL+  L  D
Sbjct:    3 RVGIGYDVHALVAGRPLILAGIDIPHEKGLLGHSDADVLTHTLMDALLGALALGDLGKHFPDTDERYRGISSMKLLEQVMKLLEERGYAIGNIDCIIAAQRPKLAPYIPQMRENLARALKTD 124
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CALS8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 56/123 (45.53%), Postives = 85/123 (69.11%), Query Frame = 1 
Query:  313 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            F+VG GFD+HR      LI+GG+ +P E+G   HSD DVL+H ++DAILGA+G  DIG++FPD+D K+K   S V +KE  +L+   G  I N+D T++  +PK+SPY + ++TN+++ L  +
Sbjct:    2 FKVGFGFDVHRFSEDRKLILGGVEIPFEKGLLGHSDADVLIHAIIDAILGAMGENDIGRLFPDTDMKYKDISSIVLLKEVSKLLKNKGMSIINIDTTIVAQKPKISPYTDEMKTNIAKALNIE 124
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_VIBCH2.324e-2948.362-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_VIBC32.324e-2948.362-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHESR2.324e-2948.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHESM2.324e-2948.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHESA2.324e-2948.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MANSM2.324e-2949.572-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_HAEIG2.324e-2949.182-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_DESHY2.324e-2947.542-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_DESHD2.324e-2947.542-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CALS82.324e-2945.532-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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