FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_AZOSE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azoarcus sp. (strain EbN1) GN=ispF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 60/124 (48.39%), Postives = 84/124 (67.74%), Query Frame = 1
Query:  310 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            PFR+G GFD+H L PG  LI+GG+++P ERG   HSD DVLLH + DA+LGA GL DIG++FPD+D    GA S V ++EA   +  AG+ + N+DAT+I   P++ P+   +  N++  LG D
Sbjct:    4 PFRIGQGFDVHALVPGRALIVGGVHIPFERGLLGHSDADVLLHALTDALLGAAGLGDIGRLFPDTDAAHAGADSRVLLREAFAAVRAAGFGVVNVDATVICRAPRILPHAPAMVANIAADLGID 127          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SHISS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella sonnei (strain Ss046) GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SHIFL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella flexneri GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SHIF8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SHIDS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SHIBS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SHIB3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SHEON (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella oneidensis GN=ispF PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +  R+GHGFD+H+     PLI+ G+ VP+E G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+D  +KGA S V ++    L    G+E+GNLD T+I   PK++P+ E +R  L+  L AD
Sbjct:    1 MKIRIGHGFDVHKFGEPRPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLRHCYALAKAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNAD 125          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SALTY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella typhimurium GN=ispF PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SALTI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella typhi GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_AZOSE2.324e-2948.392-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHISS3.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHIFL3.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHIF83.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHIDS3.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHIBS3.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHIB33.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHEON3.036e-2948.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALTY3.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALTI3.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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