FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SALSV (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SALPK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SALPC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella paratyphi C (strain RKS4594) GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SALPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SALPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella paratyphi A GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SALNS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella newport (strain SL254) GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SALHS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella heidelberg (strain SL476) GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SALCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella choleraesuis GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPRMRVFIAEDLG 121
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SALA4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella agona (strain SL483) GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I   PK+ P+   +R  ++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLG 121
[Close]
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PROM2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Prochlorococcus marinus (strain MIT 9215) GN=ispF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 60/125 (48.00%), Postives = 85/125 (68.00%), Query Frame = 1 
Query:  313 FRVGHGFDLHRLEPGYPLIIGGI--NVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            FR+G+G+D+HRLE G  LIIGG+  N P   G + HSD DVL H ++DA+LGAL L DIG+ FP SD KWK   S + + + + L+ + G+EI N+D+ ++  RPK+ PY E ++ NLS+ L  D
Sbjct:    8 FRIGNGYDIHRLEIGRKLIIGGVKLNHPDNLGLDGHSDADVLSHSIMDALLGALSLGDIGKYFPPSDEKWKDVDSLILLSKVIDLVRKQGWEINNIDSVIVAERPKIKPYVEIMKRNLSKTLKID 132
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_SALSV3.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALPK3.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALPC3.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALPB3.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALPA3.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALNS3.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALHS3.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALCH3.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALA43.036e-2949.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PROM23.036e-2948.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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