FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_RALPJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia pickettii (strain 12J) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.115e-31
Identity = 63/126 (50.00%), Postives = 87/126 (69.05%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            +  R+G G+D+H L  G  LI+GG+ +PH RG   HSD D LLH + DA+ GA GL DIG+ FPD+DP + GA S V ++EAVR + +AGY +GN+DAT+I  +PKL+P+   +  NL+E LG  P
Sbjct:    4 MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDPAFAGADSRVLLREAVRRVHKAGYAVGNVDATVIAQKPKLAPHVPGMVANLAEDLGIAP 129          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PELCD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.115e-31
Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+GHG+D+H+L     LI+GG+++PH  G   HSD DVLLH + DAILGALG  DIG+ FPD+DP +KG  S   + E +RL +  GY +GNLDAT+I  RPKL+P+   +R N++E  G D
Sbjct:    3 RIGHGYDVHQLVAERKLILGGVDIPHTLGLLGHSDADVLLHAICDAILGALGEGDIGKHFPDTDPAYKGISSIKLLHEVMRLAETKGYRLGNLDATIIAQRPKLAPFIGNMRENIAEACGTD 124          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_RALEJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.456e-31
Identity = 64/125 (51.20%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  307 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            +PF  RVG G+D+H L PG  LI+GG+++PH+RG   HSD D LLH + DA+ GA GL DIG+ FPD+D ++ GA S V ++EA R + EAGYEIGN+DA++I  +PKL+P+   +  N+++ LG
Sbjct:    2 MPFDIRVGQGYDVHALVPGRKLILGGVHIPHDRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDAQFAGADSRVLLREAARRVREAGYEIGNVDASVIAQQPKLAPHIPGMVANIADDLG 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BORA1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bordetella avium (strain 197N) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.456e-31
Identity = 64/123 (52.03%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            +PFRVG GFD+H L  G PLIIGG+ + H  G   HSD DVLLH V DAILGA GL DIG+ FPD+DP++KGA S V ++EA+  +D AG+++ N+DAT+    PK+ P+   +  N++  LG
Sbjct:    3 IPFRVGQGFDVHALVTGRPLIIGGVRIEHSHGLLGHSDADVLLHAVTDAILGAAGLGDIGRHFPDTDPRFKGADSRVLLREAMARVDAAGWQVVNVDATVHAQAPKIGPHAPAMVANIAADLG 125          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_HAHCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Hahella chejuensis (strain KCTC 2396) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.901e-31
Identity = 59/118 (50.00%), Postives = 86/118 (72.88%), Query Frame = 1
Query:  313 FRVGHGFDLHRL-EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLS 663
            FR+GHGFD+H   E G  ++IGG+N+PHERG +AHSDGDVLLH + DA+LGA    DIG+ FPD+DP + GA S   ++  V  + + GY+IGN+D T++   PK++P+ E++R N++
Sbjct:    4 FRIGHGFDVHAFSETGDLIVIGGVNIPHERGLQAHSDGDVLLHAICDALLGAAAFGDIGKHFPDTDPSFSGADSRNLLRSVVSKLHQKGYKIGNIDGTIVAQAPKMAPHIESMRVNIA 121          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_ERWCT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia carotovora subsp. atroseptica GN=ispF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.901e-31
Identity = 60/117 (51.28%), Postives = 87/117 (74.36%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666
            R+GHGFD+H+     PL+IGG+ +P+ +G  AHSDGDV+LH V DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +++ GY++GNLD T+I   PK++P+   +R NL+E
Sbjct:    2 RIGHGFDVHKFGGEGPLVIGGVRIPYTQGLLAHSDGDVVLHAVTDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAWRRINDKGYQLGNLDVTIIAQAPKMAPHIPQMRVNLAE 118          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SOLUE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Solibacter usitatus (strain Ellin6076) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.483e-31
Identity = 65/122 (53.28%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R G G+D+HR+  G  +I+GG+ VP E G E HSD DVL H + DAILGA  L DIG  FPDSDP+WKG  S VF++ A  L  + GY I N+D+T+IL RPKL  +++TIR  L+E L  D
Sbjct:    5 RTGLGWDVHRIATGRKMILGGVTVPCEFGLEGHSDADVLAHAITDAILGAAALGDIGMHFPDSDPRWKGCDSLVFLRHARDLATQKGYRIVNVDSTIILERPKLKDFRQTIRERLAETLELD 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_DINSH (Bifunctional enzyme ispD/ispF OS=Dinoroseobacter shibae (strain DFL 12) GN=ispDF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.483e-31
Identity = 62/126 (49.21%), Postives = 83/126 (65.87%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            +  R G+G+D+HR   G  +I+ G+ VPH+R    HSD DV +H V DAI GALG  DIGQ FP SDP+WKGA S +F++ AV L  E GY I ++D TL+  RPK+ PY   ++  +SEL+G  P
Sbjct:  242 MDIRTGNGYDVHRFGTGDAVILCGVEVPHDRALMGHSDADVGMHAVTDAIYGALGDGDIGQHFPPSDPQWKGAASEIFLRHAVALAAERGYTITHMDCTLVCERPKIGPYHAVMKAKMSELMGLQP 367          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_THEEB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.243e-31
Identity = 61/125 (48.80%), Postives = 83/125 (66.40%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +  R+G+G+D+HRL P  PLI+GGI + H  G   HSD DVL H ++DA+LGAL L DIG  FP SDP+W GA S V + +   L+ E G+ +GN+DA ++  RPKL PY + +R  L+  LG D
Sbjct:    2 MKIRIGNGYDIHRLVPERPLILGGIRLEHACGLLGHSDADVLTHAIMDALLGALSLGDIGHYFPPSDPQWAGADSQVLLAKVAALIAERGWRVGNIDAVVVAERPKLKPYLDPMRDRLATTLGID 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PSEAB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ispF PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.236e-31
Identity = 58/120 (48.33%), Postives = 89/120 (74.17%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S   ++  V ++ E G+++GN+DAT++   PK++P+ ET+R +++E LG
Sbjct:    2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGSIAEDLG 121          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_RALPJ1.115e-3150.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PELCD1.115e-3151.642-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALEJ1.456e-3151.202-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BORA11.456e-3152.032-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_HAHCH1.901e-3150.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ERWCT1.901e-3151.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SOLUE2.483e-3153.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_DINSH2.483e-3149.21Bifunctional enzyme ispD/ispF OS=Dinoroseobacter s... [more]
ISPF_THEEB3.243e-3148.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEAB4.236e-3148.332-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
back to top