FC875314
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_DEHSC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Dehalococcoides sp. (strain CBDB1) GN=ispF PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25 Identity = 51/123 (41.46%), Postives = 81/123 (65.85%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684 R+G+G+D+HRL PG L++GG+ +P E G SD DVL H ++D++LGA L DIG FP DPK+KG S +++ L+ + G+ I N+D+ ++ PKL + +T+R +L++ +G DP Sbjct: 2 RIGNGYDVHRLAPGQKLVLGGVEIPFECGLIGWSDADVLTHAIMDSLLGAAALGDIGLYFPPGDPKYKGISSLKLLEQVTDLLAKKGFGIINVDSVIVAEEPKLRGHIDTMRKHLAKAMGIDP 124
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CHLTE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobium tepidum GN=ispF PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25 Identity = 53/122 (43.44%), Postives = 79/122 (64.75%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 R+G G D+H+ G LIIGG+ VP G HSD DVLLH + DA+LGA L DIG+ FPD+ P +K A S ++ +L+++ GY+ N+D L+L +PK++PY + +R N++ LG + Sbjct: 2 RIGIGIDVHQFAEGRKLIIGGVEVPSPIGLLGHSDADVLLHAISDALLGAAALGDIGKHFPDTSPDYKDADSMELLRHVCKLLEQEGYKPVNVDTMLLLEKPKIAPYIDQMRRNIARCLGLE 123
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BACFR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacteroides fragilis GN=ispF PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25 Identity = 54/125 (43.20%), Postives = 82/125 (65.60%), Query Frame = 1 Query: 307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 + +VG GFD+H+L G L +GGI + HE+G HSD DVL+H + DA+LGA + DIG FPD+ ++K S + +K+ V L+ GY+IGN+DAT+ RPKL + +++ L+E++G D Sbjct: 1 MKIKVGFGFDVHQLVEGRELWLGGILLEHEKGLLGHSDADVLVHAICDALLGAANMRDIGYHFPDNAGEYKNIDSKILLKKTVELIAAKGYQIGNIDATICAERPKLKAHIPSMQQVLAEVMGID 125
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BACFN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ispF PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25 Identity = 54/125 (43.20%), Postives = 82/125 (65.60%), Query Frame = 1 Query: 307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 + +VG GFD+H+L G L +GGI + HE+G HSD DVL+H + DA+LGA + DIG FPD+ ++K S + +K+ V L+ GY+IGN+DAT+ RPKL + +++ L+E++G D Sbjct: 1 MKIKVGFGFDVHQLVEGRELWLGGILLEHEKGLLGHSDADVLVHAICDALLGAANMRDIGYHFPDNAGEYKNIDSKILLKKTVELIATKGYQIGNIDATICAERPKLKAHIPSMQQVLAEVMGID 125
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_RHORT (Bifunctional enzyme ispD/ispF OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=ispDF PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25 Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672 R+G GFD+HRL PG + + GI +PH G HSD D +H + DA+LG L DIG+ FP SD +WKGA S++F++ A L+ G I N+D T++ +PK+ P++ + L+E+L Sbjct: 228 RIGSGFDVHRLGPGDFVTLNGIRIPHSHGLVGHSDADAPMHALTDALLGCLNAGDIGRHFPPSDMRWKGADSAIFLRHAAALITALGGRILNVDITILCEQPKIGPHRARMSARLAEIL 346
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_AZOC5 (Bifunctional enzyme ispD/ispF OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=ispDF PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25 Identity = 56/125 (44.80%), Postives = 79/125 (63.20%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADPPL 690 R G GFD+H PG +++GG+ +P +RG + HSD DV LH + DA+LGAL DIG FP SDP+WKGA S F+ A+ + E G + +LD TLI PK+ P+++ IR ++ + D PL Sbjct: 231 RTGTGFDVHAFGPGDHVMLGGVAIPFDRGLDGHSDADVGLHALTDAVLGALADGDIGAHFPPSDPQWKGATSDRFLAFAIERVRERGGIVAHLDLTLICEAPKVGPHRDAIRAEIARI--CDLPL 353
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_VEREI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Verminephrobacter eiseniae (strain EF01-2) GN=ispF PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25 Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCE--AHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 R+G G+D+H L PG L+IGG+ + H G HSD DVLLH + DA+LGA L DIG+ FPD+D ++ A S + + EA R + AGYEIGN+D+T++ P+L+ + +R ++ LG D Sbjct: 4 RIGEGWDVHALVPGRRLVIGGVELEHPMGLGLLGHSDADVLLHAITDALLGAAALGDIGRHFPDTDAAFRAADSRLLLAEAARRVRAAGYEIGNIDSTVVAQAPRLAAHIPAMRLAIARALGVD 127
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_LEPIN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira interrogans GN=ispF PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25 Identity = 56/122 (45.90%), Postives = 78/122 (63.93%), Query Frame = 1 Query: 313 FRVGHGFDLHRLEPGY--PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672 +R+G+G D H+LE PLI+GGI E HSD D++LH + DAILGAL L DIGQ FPD+DP K S + + + + LM E +++ N+D T+I RPK++P K+ I +LS LL Sbjct: 2 YRIGNGIDFHKLEINLNRPLILGGIECESEFALVGHSDADIILHAISDAILGALALGDIGQYFPDTDPSLKNIDSKIILVKCLELMKEKNFDLVNIDCTVIGERPKITPLKDRITKSLSNLL 123
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_LEPIC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispF PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25 Identity = 56/122 (45.90%), Postives = 78/122 (63.93%), Query Frame = 1 Query: 313 FRVGHGFDLHRLEPGY--PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672 +R+G+G D H+LE PLI+GGI E HSD D++LH + DAILGAL L DIGQ FPD+DP K S + + + + LM E +++ N+D T+I RPK++P K+ I +LS LL Sbjct: 2 YRIGNGIDFHKLEINLNRPLILGGIECESEFALVGHSDADIILHAISDAILGALALGDIGQYFPDTDPSLKNIDSKIILVKCLELMKEKNFDLVNIDCTVIGERPKIAPLKDRITKSLSNLL 123
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CLOBM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=ispF PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25 Identity = 51/122 (41.80%), Postives = 82/122 (67.21%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 R+G G+D+H+L PLIIGG+ +PH++G HSD DVL+H ++DA+LGA L DIG+ FPDSD +K S + + + L+++ GY+I N+D T+I +PK+ + + ++ N+ + L D Sbjct: 2 RIGLGYDVHKLVENRPLIIGGVTIPHDKGLLGHSDADVLVHAIMDALLGAAALGDIGKHFPDSDKNFKNISSLLLLSKVKDLINKEGYKIVNIDCTIIAQKPKMLYHIDAMKKNICKCLKLD 123 The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bpback to top |