FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_DEHSC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Dehalococcoides sp. (strain CBDB1) GN=ispF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 51/123 (41.46%), Postives = 81/123 (65.85%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            R+G+G+D+HRL PG  L++GG+ +P E G    SD DVL H ++D++LGA  L DIG  FP  DPK+KG  S   +++   L+ + G+ I N+D+ ++   PKL  + +T+R +L++ +G DP
Sbjct:    2 RIGNGYDVHRLAPGQKLVLGGVEIPFECGLIGWSDADVLTHAIMDSLLGAAALGDIGLYFPPGDPKYKGISSLKLLEQVTDLLAKKGFGIINVDSVIVAEEPKLRGHIDTMRKHLAKAMGIDP 124          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CHLTE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobium tepidum GN=ispF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 53/122 (43.44%), Postives = 79/122 (64.75%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+G G D+H+   G  LIIGG+ VP   G   HSD DVLLH + DA+LGA  L DIG+ FPD+ P +K A S   ++   +L+++ GY+  N+D  L+L +PK++PY + +R N++  LG +
Sbjct:    2 RIGIGIDVHQFAEGRKLIIGGVEVPSPIGLLGHSDADVLLHAISDALLGAAALGDIGKHFPDTSPDYKDADSMELLRHVCKLLEQEGYKPVNVDTMLLLEKPKIAPYIDQMRRNIARCLGLE 123          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BACFR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacteroides fragilis GN=ispF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 54/125 (43.20%), Postives = 82/125 (65.60%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +  +VG GFD+H+L  G  L +GGI + HE+G   HSD DVL+H + DA+LGA  + DIG  FPD+  ++K   S + +K+ V L+   GY+IGN+DAT+   RPKL  +  +++  L+E++G D
Sbjct:    1 MKIKVGFGFDVHQLVEGRELWLGGILLEHEKGLLGHSDADVLVHAICDALLGAANMRDIGYHFPDNAGEYKNIDSKILLKKTVELIAAKGYQIGNIDATICAERPKLKAHIPSMQQVLAEVMGID 125          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BACFN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ispF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 54/125 (43.20%), Postives = 82/125 (65.60%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +  +VG GFD+H+L  G  L +GGI + HE+G   HSD DVL+H + DA+LGA  + DIG  FPD+  ++K   S + +K+ V L+   GY+IGN+DAT+   RPKL  +  +++  L+E++G D
Sbjct:    1 MKIKVGFGFDVHQLVEGRELWLGGILLEHEKGLLGHSDADVLVHAICDALLGAANMRDIGYHFPDNAGEYKNIDSKILLKKTVELIATKGYQIGNIDATICAERPKLKAHIPSMQQVLAEVMGID 125          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_RHORT (Bifunctional enzyme ispD/ispF OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=ispDF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            R+G GFD+HRL PG  + + GI +PH  G   HSD D  +H + DA+LG L   DIG+ FP SD +WKGA S++F++ A  L+   G  I N+D T++  +PK+ P++  +   L+E+L
Sbjct:  228 RIGSGFDVHRLGPGDFVTLNGIRIPHSHGLVGHSDADAPMHALTDALLGCLNAGDIGRHFPPSDMRWKGADSAIFLRHAAALITALGGRILNVDITILCEQPKIGPHRARMSARLAEIL 346          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_AZOC5 (Bifunctional enzyme ispD/ispF OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=ispDF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 56/125 (44.80%), Postives = 79/125 (63.20%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADPPL 690
            R G GFD+H   PG  +++GG+ +P +RG + HSD DV LH + DA+LGAL   DIG  FP SDP+WKGA S  F+  A+  + E G  + +LD TLI   PK+ P+++ IR  ++ +   D PL
Sbjct:  231 RTGTGFDVHAFGPGDHVMLGGVAIPFDRGLDGHSDADVGLHALTDAVLGALADGDIGAHFPPSDPQWKGATSDRFLAFAIERVRERGGIVAHLDLTLICEAPKVGPHRDAIRAEIARI--CDLPL 353          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_VEREI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Verminephrobacter eiseniae (strain EF01-2) GN=ispF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCE--AHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+G G+D+H L PG  L+IGG+ + H  G     HSD DVLLH + DA+LGA  L DIG+ FPD+D  ++ A S + + EA R +  AGYEIGN+D+T++   P+L+ +   +R  ++  LG D
Sbjct:    4 RIGEGWDVHALVPGRRLVIGGVELEHPMGLGLLGHSDADVLLHAITDALLGAAALGDIGRHFPDTDAAFRAADSRLLLAEAARRVRAAGYEIGNIDSTVVAQAPRLAAHIPAMRLAIARALGVD 127          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_LEPIN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira interrogans GN=ispF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 56/122 (45.90%), Postives = 78/122 (63.93%), Query Frame = 1
Query:  313 FRVGHGFDLHRLEPGY--PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            +R+G+G D H+LE     PLI+GGI    E     HSD D++LH + DAILGAL L DIGQ FPD+DP  K   S + + + + LM E  +++ N+D T+I  RPK++P K+ I  +LS LL
Sbjct:    2 YRIGNGIDFHKLEINLNRPLILGGIECESEFALVGHSDADIILHAISDAILGALALGDIGQYFPDTDPSLKNIDSKIILVKCLELMKEKNFDLVNIDCTVIGERPKITPLKDRITKSLSNLL 123          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_LEPIC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 56/122 (45.90%), Postives = 78/122 (63.93%), Query Frame = 1
Query:  313 FRVGHGFDLHRLEPGY--PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            +R+G+G D H+LE     PLI+GGI    E     HSD D++LH + DAILGAL L DIGQ FPD+DP  K   S + + + + LM E  +++ N+D T+I  RPK++P K+ I  +LS LL
Sbjct:    2 YRIGNGIDFHKLEINLNRPLILGGIECESEFALVGHSDADIILHAISDAILGALALGDIGQYFPDTDPSLKNIDSKIILVKCLELMKEKNFDLVNIDCTVIGERPKIAPLKDRITKSLSNLL 123          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CLOBM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=ispF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 51/122 (41.80%), Postives = 82/122 (67.21%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+G G+D+H+L    PLIIGG+ +PH++G   HSD DVL+H ++DA+LGA  L DIG+ FPDSD  +K   S + + +   L+++ GY+I N+D T+I  +PK+  + + ++ N+ + L  D
Sbjct:    2 RIGLGYDVHKLVENRPLIIGGVTIPHDKGLLGHSDADVLVHAIMDALLGAAALGDIGKHFPDSDKNFKNISSLLLLSKVKDLINKEGYKIVNIDCTIIAQKPKMLYHIDAMKKNICKCLKLD 123          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_DEHSC3.473e-2541.462-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CHLTE3.473e-2543.442-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACFR3.473e-2543.202-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACFN3.473e-2543.202-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_RHORT3.473e-2542.86Bifunctional enzyme ispD/ispF OS=Rhodospirillum ru... [more]
ISPDF_AZOC53.473e-2544.80Bifunctional enzyme ispD/ispF OS=Azorhizobium caul... [more]
ISPF_VEREI4.536e-2544.352-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LEPIN4.536e-2545.902-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LEPIC4.536e-2545.902-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CLOBM4.536e-2541.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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