FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_HALHL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ispF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.320e-24
Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 1
Query:  316 RVGHGFDLHRLE-PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            R+G GFD+HR    G    +GG+ VP+ +  EAHSDGDVLLH + D +LGA G+ DIG+ FPD DP+W+ A S   +   +RL  EAG+   N+D T+I   PKL+PY   +R   ++ +   P
Sbjct:    3 RIGQGFDVHRFAGKGEGFRLGGVAVPYHKRLEAHSDGDVLLHAITDGLLGACGMGDIGRHFPDDDPRWRDADSIGLLASTLRLAAEAGWVPVNVDGTVIAQAPKLAPYIGAMRQATADAMELSP 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CHLP8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobaculum parvum (strain NCIB 8327) GN=ispF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.320e-24
Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+G G D+H+      LI+GG+ VP   G   HSD DVLLH + DA+LGA  L DIG+ FPD+ P +K A S   +K   +L+++ GY+  N+D  L+L +PK++PY E +R N++  L  D
Sbjct:    2 RIGIGIDVHQFSEDRKLIVGGVEVPSPVGLLGHSDADVLLHAISDALLGAAALGDIGKHFPDTSPDYKDADSMELLKHVGKLLEQEGYKPVNIDTMLLLEKPKIAPYIEQMRRNIASCLDMD 123          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_SULNB (Bifunctional enzyme ispD/ispF OS=Sulfurovum sp. (strain NBC37-1) GN=ispDF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.320e-24
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 1
Query:  322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADPPL 690
            G G D+H  E G  +++ G+ +  + G +AHSDGDV +H ++DA+LGA G+ DIG+++PD+D  + GA S+  + + VR +   GY IGN+D T++   P+L PYKE ++ +++ LL   P L
Sbjct:  215 GFGLDIHPFEEGKAMVLCGVKIAVDYGFKAHSDGDVAIHALIDALLGAAGMGDIGELYPDTDQSYAGANSTRLLSDTVRKIRTHGYTIGNVDMTILAQAPRLLPYKEKMKHSIASLLEIRPHL 337          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PELLD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelodictyon luteolum (strain DSM 273) GN=ispF PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24
Identity = 54/125 (43.20%), Postives = 77/125 (61.60%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADPPL 690
            R+G G D+H    G  LI+GG+++P  +G E HSD DVLLH V DA+LGA  L DIG  FP++  ++K   S + +K   RL+ + GY   N+DA L+L  PK++PY   +R N++  L  D  L
Sbjct:    2 RIGIGIDVHPFAEGRKLIVGGVDIPSPKGLEGHSDADVLLHAVSDALLGAAALGDIGLHFPNTSAEYKDIDSMILLKHVGRLLTKNGYRTVNVDAMLLLEAPKIAPYVADMRRNIARCLDIDTSL 126          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BACTN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacteroides thetaiotaomicron GN=ispF PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24
Identity = 53/125 (42.40%), Postives = 78/125 (62.40%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +  RVG GFD+H+L  G  L +GGI + H +G   HSD DVLLH V DA+LGA  + DIG  FPD+  ++K   S + +K+ V L+   GY +GN+DAT+   RPKL  +   ++  ++ ++G D
Sbjct:    1 MKIRVGFGFDVHQLVEGRELWLGGIRLEHSKGLLGHSDADVLLHTVCDALLGAANMRDIGYHFPDTAGEYKNIDSKILLKKTVELIATKGYRVGNIDATICAERPKLKAHIPLMQETMAAVMGID 125          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_TREPA (Bifunctional enzyme ispD/ispF OS=Treponema pallidum GN=ispDF PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24
Identity = 53/119 (44.54%), Postives = 77/119 (64.71%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            RVG G D+H L  G PLI+ GI++P ++G + HSD DVL H  +DA+LGA GL DIG  FP  D +WK A S   ++   +L+  A + + NLDA + L +P L P++E +R +L++ L
Sbjct:  244 RVGLGTDMHALCAGRPLILAGIHIPSKKGAQGHSDADVLAHASIDALLGAAGLGDIGTFFPSCDGRWKDAHSCALLRHTWQLVRAACWRLVNLDAVVCLEQPALHPFREAMRASLAQAL 362          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_HELAH (Bifunctional enzyme ispD/ispF OS=Helicobacter acinonychis (strain Sheeba) GN=ispDF PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24
Identity = 54/121 (44.63%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  319 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +G GFD H      P+++GG+ +  E G +AHSDGD LLH ++DAILGA+   DIG+ FPD+DPK+K A S   +K  +      G+E+  + AT+    PK++PYK  I  NLS+LLG +
Sbjct:  249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAMIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLE 369          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_BARBK (Bifunctional enzyme ispD/ispF OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ispDF PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            R G+G+D+H  E G+ + + GI +P E+    HSD DV LH + DA+L   G  DIG  FP SDP+WK A S +F+  A+ ++ +A   I N+D TLI  +PK+ PY+  +  NL ++L
Sbjct:  237 RTGNGYDVHSFEDGHYITLCGIKIPFEKKLNGHSDADVALHALTDALLATQGAGDIGTHFPPSDPQWKNASSEIFLHHAIEIIKKAEGRIANVDITLIAEKPKIGPYRHIMTENLMKIL 355          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_AGRT5 (Bifunctional enzyme ispD/ispF OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ispDF PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.940e-24
Identity = 50/120 (41.67%), Postives = 79/120 (65.83%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R G+G+D+H+LE G  + + GI + H++  + HSD DV LH + DA+L   G  DIG  FP SDP+WKGA S +F++ A +++ + G  I N D +LI   P++ P+++ +R  LS++LG
Sbjct:  241 RTGNGYDVHQLEAGDGVTLCGIFIEHDQRLKGHSDADVALHALTDALLATCGAGDIGDHFPPSDPQWKGAASRIFLEHAAKVVRDNGGTIMNADVSLIAEAPRIGPHRQAMREALSDMLG 360          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_RUBXD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=ispF PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 55/126 (43.65%), Postives = 81/126 (64.29%), Query Frame = 1
Query:  313 FRVGHGFDLHRLEP---GYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +RVG G D+H       G  L++GG+ +P ERG   HSD DVL H V DA+LGA GL DIG  FPD+D +++ A S   ++EA R++   G+E+ N+DA +I  RP++  ++E +R NL+  LG +
Sbjct:    4 YRVGLGVDVHAFADPAEGRQLVLGGVRIPSERGLRGHSDADVLAHAVTDALLGAAGLEDIGHYFPDTDERFRDADSIWLLREARRIVG-GGWEVVNVDAVVICERPRIREHREKMRENLAAALGVE 128          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_HALHL1.320e-2444.352-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CHLP81.320e-2443.442-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_SULNB1.320e-2440.65Bifunctional enzyme ispD/ispF OS=Sulfurovum sp. (s... [more]
ISPF_PELLD1.724e-2443.202-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACTN1.724e-2442.402-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_TREPA1.724e-2444.54Bifunctional enzyme ispD/ispF OS=Treponema pallidu... [more]
ISPDF_HELAH1.724e-2444.63Bifunctional enzyme ispD/ispF OS=Helicobacter acin... [more]
ISPDF_BARBK1.724e-2442.02Bifunctional enzyme ispD/ispF OS=Bartonella bacill... [more]
ISPDF_AGRT52.940e-2441.67Bifunctional enzyme ispD/ispF OS=Agrobacterium tum... [more]
ISPF_RUBXD3.840e-2443.652-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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