FC875314
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_HALHL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ispF PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.320e-24 Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 1 Query: 316 RVGHGFDLHRLE-PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684 R+G GFD+HR G +GG+ VP+ + EAHSDGDVLLH + D +LGA G+ DIG+ FPD DP+W+ A S + +RL EAG+ N+D T+I PKL+PY +R ++ + P Sbjct: 3 RIGQGFDVHRFAGKGEGFRLGGVAVPYHKRLEAHSDGDVLLHAITDGLLGACGMGDIGRHFPDDDPRWRDADSIGLLASTLRLAAEAGWVPVNVDGTVIAQAPKLAPYIGAMRQATADAMELSP 126
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CHLP8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobaculum parvum (strain NCIB 8327) GN=ispF PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.320e-24 Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 R+G G D+H+ LI+GG+ VP G HSD DVLLH + DA+LGA L DIG+ FPD+ P +K A S +K +L+++ GY+ N+D L+L +PK++PY E +R N++ L D Sbjct: 2 RIGIGIDVHQFSEDRKLIVGGVEVPSPVGLLGHSDADVLLHAISDALLGAAALGDIGKHFPDTSPDYKDADSMELLKHVGKLLEQEGYKPVNIDTMLLLEKPKIAPYIEQMRRNIASCLDMD 123
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_SULNB (Bifunctional enzyme ispD/ispF OS=Sulfurovum sp. (strain NBC37-1) GN=ispDF PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.320e-24 Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 1 Query: 322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADPPL 690 G G D+H E G +++ G+ + + G +AHSDGDV +H ++DA+LGA G+ DIG+++PD+D + GA S+ + + VR + GY IGN+D T++ P+L PYKE ++ +++ LL P L Sbjct: 215 GFGLDIHPFEEGKAMVLCGVKIAVDYGFKAHSDGDVAIHALIDALLGAAGMGDIGELYPDTDQSYAGANSTRLLSDTVRKIRTHGYTIGNVDMTILAQAPRLLPYKEKMKHSIASLLEIRPHL 337
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PELLD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelodictyon luteolum (strain DSM 273) GN=ispF PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24 Identity = 54/125 (43.20%), Postives = 77/125 (61.60%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADPPL 690 R+G G D+H G LI+GG+++P +G E HSD DVLLH V DA+LGA L DIG FP++ ++K S + +K RL+ + GY N+DA L+L PK++PY +R N++ L D L Sbjct: 2 RIGIGIDVHPFAEGRKLIVGGVDIPSPKGLEGHSDADVLLHAVSDALLGAAALGDIGLHFPNTSAEYKDIDSMILLKHVGRLLTKNGYRTVNVDAMLLLEAPKIAPYVADMRRNIARCLDIDTSL 126
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BACTN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacteroides thetaiotaomicron GN=ispF PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24 Identity = 53/125 (42.40%), Postives = 78/125 (62.40%), Query Frame = 1 Query: 307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 + RVG GFD+H+L G L +GGI + H +G HSD DVLLH V DA+LGA + DIG FPD+ ++K S + +K+ V L+ GY +GN+DAT+ RPKL + ++ ++ ++G D Sbjct: 1 MKIRVGFGFDVHQLVEGRELWLGGIRLEHSKGLLGHSDADVLLHTVCDALLGAANMRDIGYHFPDTAGEYKNIDSKILLKKTVELIATKGYRVGNIDATICAERPKLKAHIPLMQETMAAVMGID 125
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_TREPA (Bifunctional enzyme ispD/ispF OS=Treponema pallidum GN=ispDF PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24 Identity = 53/119 (44.54%), Postives = 77/119 (64.71%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672 RVG G D+H L G PLI+ GI++P ++G + HSD DVL H +DA+LGA GL DIG FP D +WK A S ++ +L+ A + + NLDA + L +P L P++E +R +L++ L Sbjct: 244 RVGLGTDMHALCAGRPLILAGIHIPSKKGAQGHSDADVLAHASIDALLGAAGLGDIGTFFPSCDGRWKDAHSCALLRHTWQLVRAACWRLVNLDAVVCLEQPALHPFREAMRASLAQAL 362
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_HELAH (Bifunctional enzyme ispD/ispF OS=Helicobacter acinonychis (strain Sheeba) GN=ispDF PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24 Identity = 54/121 (44.63%), Postives = 77/121 (63.64%), Query Frame = 1 Query: 319 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 +G GFD H P+++GG+ + E G +AHSDGD LLH ++DAILGA+ DIG+ FPD+DPK+K A S +K + G+E+ + AT+ PK++PYK I NLS+LLG + Sbjct: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAMIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLE 369
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_BARBK (Bifunctional enzyme ispD/ispF OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ispDF PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24 Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672 R G+G+D+H E G+ + + GI +P E+ HSD DV LH + DA+L G DIG FP SDP+WK A S +F+ A+ ++ +A I N+D TLI +PK+ PY+ + NL ++L Sbjct: 237 RTGNGYDVHSFEDGHYITLCGIKIPFEKKLNGHSDADVALHALTDALLATQGAGDIGTHFPPSDPQWKNASSEIFLHHAIEIIKKAEGRIANVDITLIAEKPKIGPYRHIMTENLMKIL 355
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_AGRT5 (Bifunctional enzyme ispD/ispF OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ispDF PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.940e-24 Identity = 50/120 (41.67%), Postives = 79/120 (65.83%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675 R G+G+D+H+LE G + + GI + H++ + HSD DV LH + DA+L G DIG FP SDP+WKGA S +F++ A +++ + G I N D +LI P++ P+++ +R LS++LG Sbjct: 241 RTGNGYDVHQLEAGDGVTLCGIFIEHDQRLKGHSDADVALHALTDALLATCGAGDIGDHFPPSDPQWKGAASRIFLEHAAKVVRDNGGTIMNADVSLIAEAPRIGPHRQAMREALSDMLG 360
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_RUBXD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=ispF PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24 Identity = 55/126 (43.65%), Postives = 81/126 (64.29%), Query Frame = 1 Query: 313 FRVGHGFDLHRLEP---GYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 +RVG G D+H G L++GG+ +P ERG HSD DVL H V DA+LGA GL DIG FPD+D +++ A S ++EA R++ G+E+ N+DA +I RP++ ++E +R NL+ LG + Sbjct: 4 YRVGLGVDVHAFADPAEGRQLVLGGVRIPSERGLRGHSDADVLAHAVTDALLGAAGLEDIGHYFPDTDERFRDADSIWLLREARRIVG-GGWEVVNVDAVVICERPRIREHREKMRENLAAALGVE 128 The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bpback to top |