FC875314
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PSEHT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ispF PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23 Identity = 51/122 (41.80%), Postives = 78/122 (63.93%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 R+GHGFD+H+ PL IGG + + +G AHSDGDV +H + DAILGAL + DIG+ FPD+ +++ S + ++ V L E GY +GN D T++ PK+ P+ + +R+NL+ L + Sbjct: 3 RIGHGFDVHKFGGVGPLTIGGEKIDYPQGFLAHSDGDVAIHALCDAILGALAMGDIGKHFPDTASEYENIDSRILLRHVVSLAKEQGYVLGNGDVTIVAQAPKMLPHIQAMRSNLASDLNCE 124
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CHLPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=ispF PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23 Identity = 51/122 (41.80%), Postives = 76/122 (62.30%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 R G G D+H G L+IGG+ +P +G + HSD DVLLH V DA+LGA L DIG FP++ ++K S + +K +L+D+ G+ I N+DA L+L PK++ Y +R N++ LG + Sbjct: 2 RTGIGIDVHPFAEGRKLVIGGVEIPSAKGLDGHSDADVLLHAVSDALLGAAALGDIGLHFPNTSQEFKDIDSMILLKHVKKLLDKEGFRIVNIDAMLLLEAPKIASYINEMRKNIARCLGLE 123
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_GLUOX (Bifunctional enzyme ispD/ispF OS=Gluconobacter oxydans GN=ispDF PE=3 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23 Identity = 57/119 (47.90%), Postives = 73/119 (61.34%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672 RVG G+D+H E G LI+ GI VPH +G HSD DV +H + DAI GAL DIG+ FP SD KWK S+ F+ A + E G + N D TLI RPK+ P+ E +R L++LL Sbjct: 228 RVGLGYDVHAFEEGRKLILCGIEVPHTKGLAGHSDADVGIHTLCDAIYGALAEGDIGRHFPPSDNKWKDMDSARFLVHAGERIRERGGFLVNADVTLICERPKIGPHAEAMRNRLADLL 346
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJJ (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=ispDF PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23 Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 1 Query: 322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 G+GFD+H PL++ G+ + G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S +K+A + E G+E+ N+D ++ PKL +K+ +++N++ L D Sbjct: 213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLD 332
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJ8 (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=ispDF PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23 Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 1 Query: 322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 G+GFD+H PL++ G+ + G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S +K+A + E G+E+ N+D ++ PKL +K+ +++N++ L D Sbjct: 213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLD 332
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PELPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=ispF PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23 Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 1 Query: 316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672 R+G G D+H G L+IGG+++P G + HSD DVLLH V DA+LGA L DIG FP++ ++K S + +K+ +L+++ GY+ N+DA L+L PK++PY +R N++ L Sbjct: 2 RIGIGIDVHPFAEGRKLVIGGVHIPGHNGLDGHSDADVLLHAVSDALLGAAALGDIGLHFPNTSQEFKDIDSMILLKQVRKLLEKHGYQTVNIDAMLLLEEPKIAPYITGMRKNIARCL 120
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJR (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni (strain RM1221) GN=ispDF PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23 Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 1 Query: 322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 G+GFD+H PL++ G+ + G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S +K+A + E G+E+ N+D ++ PKL +K+ +++N++ L D Sbjct: 213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLD 332
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJE (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni GN=ispDF PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23 Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 1 Query: 322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681 G+GFD+H PL++ G+ + G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S +K+A + E G+E+ N+D ++ PKL +K+ +++N++ L D Sbjct: 213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLD 332
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_NEOSM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Neorickettsia sennetsu (strain Miyayama) GN=ispF PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.906e-23 Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 1 Query: 313 FRVGHGFDLHRLEPGYP-----LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGAL---GLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672 +RVG G+D+H+++ +++ G++VP E AHSDGDV LH +VDA+LGA G DIG +FPD+D KW+G SS F++ V L+ AGY + N D T++ P++ YK ++ +++LL Sbjct: 2 YRVGFGYDVHKIDKPVKTGNTCIVLCGVSVPCEYKVIAHSDGDVALHALVDALLGAACIEGANDIGMLFPDTDEKWRGKSSSYFVEHVVTLIQRAGYVVNNADLTIVCETPRIQQYKSEMQQQVADLL 129
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_UNCTG (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=ispF PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.489e-23 Identity = 46/118 (38.98%), Postives = 75/118 (63.56%), Query Frame = 1 Query: 319 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672 +G G+D HRL+ G LI+GG+ + G + HSD DVL+H ++DA+LGA GL DIG FPD DPK+K S ++ + + + + + N+D T+I+ PK+ P+ ++ N+S ++ Sbjct: 3 IGFGYDAHRLKKGRELILGGVKILTSEGLDGHSDADVLIHALMDALLGAAGLNDIGHFFPDMDPKYKNVSSISLLESVYKELKKQNFSVNNVDITVIVEAPKICPFIADMKENISRVI 120 The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bpback to top |