FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PSEHT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ispF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23
Identity = 51/122 (41.80%), Postives = 78/122 (63.93%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R+GHGFD+H+     PL IGG  + + +G  AHSDGDV +H + DAILGAL + DIG+ FPD+  +++   S + ++  V L  E GY +GN D T++   PK+ P+ + +R+NL+  L  +
Sbjct:    3 RIGHGFDVHKFGGVGPLTIGGEKIDYPQGFLAHSDGDVAIHALCDAILGALAMGDIGKHFPDTASEYENIDSRILLRHVVSLAKEQGYVLGNGDVTIVAQAPKMLPHIQAMRSNLASDLNCE 124          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CHLPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=ispF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23
Identity = 51/122 (41.80%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            R G G D+H    G  L+IGG+ +P  +G + HSD DVLLH V DA+LGA  L DIG  FP++  ++K   S + +K   +L+D+ G+ I N+DA L+L  PK++ Y   +R N++  LG +
Sbjct:    2 RTGIGIDVHPFAEGRKLVIGGVEIPSAKGLDGHSDADVLLHAVSDALLGAAALGDIGLHFPNTSQEFKDIDSMILLKHVKKLLDKEGFRIVNIDAMLLLEAPKIASYINEMRKNIARCLGLE 123          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_GLUOX (Bifunctional enzyme ispD/ispF OS=Gluconobacter oxydans GN=ispDF PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23
Identity = 57/119 (47.90%), Postives = 73/119 (61.34%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            RVG G+D+H  E G  LI+ GI VPH +G   HSD DV +H + DAI GAL   DIG+ FP SD KWK   S+ F+  A   + E G  + N D TLI  RPK+ P+ E +R  L++LL
Sbjct:  228 RVGLGYDVHAFEEGRKLILCGIEVPHTKGLAGHSDADVGIHTLCDAIYGALAEGDIGRHFPPSDNKWKDMDSARFLVHAGERIRERGGFLVNADVTLICERPKIGPHAEAMRNRLADLL 346          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJJ (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=ispDF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23
Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++   PKL  +K+ +++N++  L  D
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLD 332          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJ8 (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=ispDF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23
Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++   PKL  +K+ +++N++  L  D
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLD 332          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PELPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=ispF PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            R+G G D+H    G  L+IGG+++P   G + HSD DVLLH V DA+LGA  L DIG  FP++  ++K   S + +K+  +L+++ GY+  N+DA L+L  PK++PY   +R N++  L
Sbjct:    2 RIGIGIDVHPFAEGRKLVIGGVHIPGHNGLDGHSDADVLLHAVSDALLGAAALGDIGLHFPNTSQEFKDIDSMILLKQVRKLLEKHGYQTVNIDAMLLLEEPKIAPYITGMRKNIARCL 120          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJR (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni (strain RM1221) GN=ispDF PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23
Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++   PKL  +K+ +++N++  L  D
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLD 332          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJE (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni GN=ispDF PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23
Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++   PKL  +K+ +++N++  L  D
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLD 332          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_NEOSM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Neorickettsia sennetsu (strain Miyayama) GN=ispF PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.906e-23
Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 1
Query:  313 FRVGHGFDLHRLEPGYP-----LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGAL---GLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            +RVG G+D+H+++         +++ G++VP E    AHSDGDV LH +VDA+LGA    G  DIG +FPD+D KW+G  SS F++  V L+  AGY + N D T++   P++  YK  ++  +++LL
Sbjct:    2 YRVGFGYDVHKIDKPVKTGNTCIVLCGVSVPCEYKVIAHSDGDVALHALVDALLGAACIEGANDIGMLFPDTDEKWRGKSSSYFVEHVVTLIQRAGYVVNNADLTIVCETPRIQQYKSEMQQQVADLL 129          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_UNCTG (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=ispF PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.489e-23
Identity = 46/118 (38.98%), Postives = 75/118 (63.56%), Query Frame = 1
Query:  319 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            +G G+D HRL+ G  LI+GG+ +    G + HSD DVL+H ++DA+LGA GL DIG  FPD DPK+K   S   ++   + + +  + + N+D T+I+  PK+ P+   ++ N+S ++
Sbjct:    3 IGFGYDAHRLKKGRELILGGVKILTSEGLDGHSDADVLIHALMDALLGAAGLNDIGHFFPDMDPKYKNVSSISLLESVYKELKKQNFSVNNVDITVIVEAPKICPFIADMKENISRVI 120          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_PSEHT1.117e-2341.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CHLPD1.117e-2341.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_GLUOX1.117e-2347.90Bifunctional enzyme ispD/ispF OS=Gluconobacter oxy... [more]
ISPDF_CAMJJ1.117e-2341.67Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPDF_CAMJ81.117e-2341.67Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPF_PELPB1.459e-2342.022-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_CAMJR1.459e-2341.67Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPDF_CAMJE1.459e-2341.67Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPF_NEOSM1.906e-2340.632-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_UNCTG2.489e-2338.982-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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