FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_PELTS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ispF PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.251e-23
Identity = 49/123 (39.84%), Postives = 77/123 (62.60%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGADP 684
            RVG G+D+H+L  G PL++GG+++P  +G   HSD DVL H V+DA+LGA G  DIG+ FPD+D ++KG  S   +     ++   G  + N+D+ ++   PKLSP+ E ++  ++  L   P
Sbjct:    2 RVGFGYDVHKLVEGRPLVLGGVSIPFVKGLLGHSDADVLAHAVMDALLGAAGAGDIGRHFPDNDGRYKGISSMKLLARVGDILSRQGLAVVNIDSVVVAQGPKLSPFIEEMQKRMAGALQIQP 124          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_CHLCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobium chlorochromatii (strain CaD3) GN=ispF PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.251e-23
Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+G G D+H    G  L+IGG+ +P   G + HSD DVLLH + DA+LGA  L DIG  FP++  ++K   S + +K   +L+ E GY   N+DA L+L  PK++PY + +R N+++ LG
Sbjct:    2 RIGIGIDVHPFAAGRKLVIGGVYIPGHDGLDGHSDADVLLHAISDALLGAAALGDIGLHFPNTSAEFKDIDSMILLKHVGKLLAEHGYAPVNVDAMLLLEAPKIAPYIQQMRQNIADALG 121          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_NITSB (Bifunctional enzyme ispD/ispF OS=Nitratiruptor sp. (strain SB155-2) GN=ispDF PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.251e-23
Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            R+G+G D+H       L + GI +P+++G   HSD DV +H ++DA+LGA G  DIG++FPDSD  +K   S   + E VRL+   G+ I ++D T++   PK+ P+KE ++ +L +LL
Sbjct:  213 RIGNGLDVHAFCEDRKLYLCGIEIPYDKGLAGHSDADVAIHALIDALLGAAGFGDIGELFPDSDETYKDIDSKKLLCETVRLLRACGFVIEHVDLTIVAQNPKIGPFKEKMKESLHDLL 331          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SYNAS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Syntrophus aciditrophicus (strain SB) GN=ispF PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.246e-23
Identity = 50/119 (42.02%), Postives = 75/119 (63.03%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            RVG G+D HR      LI+GG+ +PHE G   HSD D L H + DA+LGA+   DIG  FPDSDP + G  S   + + + ++D+ G+ I  +D+T+I+ RPKL PY   +++ ++ +L
Sbjct:    2 RVGCGYDSHRWAAKRKLILGGVEIPHEFGLTGHSDADALTHAICDALLGAISEGDIGFQFPDSDPAYSGISSLKLLSKILEMVDKKGFAIDYIDSTVIMERPKLMPYIPDMKSKIAGVL 120          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_SACD2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=ispF PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.545e-23
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSE 666
            R+G G D+H    G  ++IGG+ +P+ERG  AHSDGDVLLH + DA+LGA  L DIG+ FPD+D  +K A S   ++     +   GY + N D T++   PK++P+   +R  ++E
Sbjct:    2 RIGQGVDVHAFGDGDKIVIGGVVIPYERGLVAHSDGDVLLHALCDALLGAAALGDIGKHFPDTDSAYKNACSRTLLRMVYSKLKAKGYSLVNADMTIVAQAPKMAPHISDMRAKIAE 118          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_LAWIP (Bifunctional enzyme ispD/ispF OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=ispDF PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.459e-23
Identity = 53/128 (41.41%), Postives = 83/128 (64.84%), Query Frame = 1
Query:  319 VGHGFDLHRL-------EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            VG+G+D+H+        +P   + +GGI++P+     AHSDGDVLLH ++DA+LG +G  DIG  FPDSD ++ G  S++ +   +  + E+  +I ++DAT++   PK+S Y+E IR+NLS LL  D
Sbjct:  237 VGYGYDVHKYVTEDQINQPIRSMRLGGISIPNAPNVVAHSDGDVLLHALMDALLGCIGGGDIGLHFPDSDKRYDGINSAILLDHVLTKVLESSIKIVHMDATIVAQLPKISQYREAIRSNLSRLLDLD 364          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_WIGBR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Wigglesworthia glossinidia brevipalpis GN=ispF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 52/120 (43.33%), Postives = 80/120 (66.67%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            RVGHGFD+H+    Y PLI+GG+++P+ +G  +HSDGDV++H ++D++LGA  L DIG +FP++D K+K   S + ++     + +  Y+IGN+D TL L  PK+S Y   I   +S  L
Sbjct:    2 RVGHGFDIHKFGKIYKPLILGGVHIPYCKGVVSHSDGDVIIHSIIDSLLGASSLGDIGILFPNNDIKYKNINSCILLQVVWNCIKKK-YKIGNIDVTLFLEYPKISSYTNKICLCISNCL 120          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_AZOPC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=ispF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 46/125 (36.80%), Postives = 80/125 (64.00%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +  R+G G+D+H L   Y L +GGI +P+E+G + HSD DVL+H + DA+LGA  + +IG  FP+++ K +   S + +K+ +  +    YE+ N D T+ + +PKL+P+   ++T L+E++  D
Sbjct:    1 MKIRIGFGYDVHPLVMNYNLWLGGIKIPYEKGLKGHSDADVLIHALCDALLGAADIGNIGTNFPNTNKKLRNIDSKILLKQTMSFIYSKNYELNNADITVCIEQPKLNPFIPQMKTCLAEIMQTD 125          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_SULDN (Bifunctional enzyme ispD/ispF OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=ispDF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 1
Query:  322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            G GFD+H  +    + +GGI +  E G  AHSDGDV +H ++DA+LGA G+ DIG +FPD+D K+KGA S   +   V  +   G+ I N+D T+   +P++  YK  +R  +S +LG D
Sbjct:  228 GVGFDVHAFDDKGEMFLGGIKIDSEYGFLAHSDGDVAIHALIDALLGAAGMGDIGMMFPDNDVKYKGADSKELLGTLVTKLRHFGFVIVNVDITIAAEKPRIGNYKMAMRKKISSILGID 347          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_GRABC (Bifunctional enzyme ispD/ispF OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ispDF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 52/120 (43.33%), Postives = 73/120 (60.83%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R+G G+D+H  E G  LI+ GI VPH +G   HSD DV +H + DAI GAL   DIG+ FP ++  WK A S+ F++ A   +   G  + N D TLI  +PK++P+   +   L+ELLG
Sbjct:  220 RIGTGYDVHAFETGRKLILCGIEVPHHQGLAGHSDADVGIHALCDAIYGALAEGDIGRHFPPTEASWKDADSARFLRHAAERIAARGGFLANADLTLICEKPKITPHAPAMIARLAELLG 339          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_PELTS3.251e-2339.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CHLCH3.251e-2342.502-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_NITSB3.251e-2340.34Bifunctional enzyme ispD/ispF OS=Nitratiruptor sp.... [more]
ISPF_SYNAS4.246e-2342.022-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SACD25.545e-2341.882-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_LAWIP9.459e-2341.41Bifunctional enzyme ispD/ispF OS=Lawsonia intracel... [more]
ISPF_WIGBR1.235e-2243.332-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AZOPC1.235e-2236.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_SULDN1.235e-2241.67Bifunctional enzyme ispD/ispF OS=Sulfurimonas deni... [more]
ISPDF_GRABC1.235e-2243.33Bifunctional enzyme ispD/ispF OS=Granulibacter bet... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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