FC875314

Overview
NameFC875314
Unique NameFC875314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJD (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=ispDF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 49/120 (40.83%), Postives = 77/120 (64.17%), Query Frame = 1
Query:  322 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA  L DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++   PKL  +K+ +++N++  L  D
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAVLGDIGELYPDTDMKFKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLD 332          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_BACV8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=ispF PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.613e-22
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = 1
Query:  307 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGAD 681
            +  RVG GFD+H+L  G  L +GGI   HE G   HSD DVL+H + DA+LGA  + DIG  FPD+  ++K   S + + E V L+   GY++GN+DAT+   RPKL      ++  L+ L+  D
Sbjct:    1 MKIRVGFGFDVHQLVTGRELWLGGIKFEHELGLLGHSDADVLIHAICDALLGAANMRDIGYHFPDTAGEFKNIDSKILLAETVDLIAAKGYKVGNVDATICAERPKLKARIPEMQLVLAHLMRID 125          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_LEIXX (Bifunctional enzyme ispD/ispF OS=Leifsonia xyli subsp. xyli GN=ispDF PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.613e-22
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            R+G G D H  +P   L + G+    E G   HSDGDV+ H +VDA+L A  L DIG +F   DP++ GA   VF+ E  RL++E G+ IGN+ A ++  RPK +P +    T LS +LGA
Sbjct:  234 RIGFGTDTHAFDPSAELWLAGLRWEGEPGLAGHSDGDVVAHAIVDALLSAARLGDIGGVFGTGDPRFSGAHGEVFLTETRRLVEEEGFRIGNVSAQIVGNRPKFAPRRAEAETLLSRVLGA 354          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_HELHP (Bifunctional enzyme ispD/ispF OS=Helicobacter hepaticus GN=ispDF PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.613e-22
Identity = 48/118 (40.68%), Postives = 74/118 (62.71%), Query Frame = 1
Query:  319 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            +G+G D+H+ E    + +GG+ +    G +AHSDGDV+LH + DAILGA+G  DIG+ FPD+D  +K A S + + E        GYE+ N D ++I   PK++PYK  +R  ++ +L
Sbjct:  225 IGNGIDVHQFEKNKQMWLGGVEIESPFGFKAHSDGDVVLHALSDAILGAIGGGDIGEWFPDTDETYKNADSKMMLSEIYTFAQSVGYELYNADISIIAQTPKIAPYKSAMRECIARIL 342          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_DESVV (Bifunctional enzyme ispD/ispF OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=ispDF PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 50/118 (42.37%), Postives = 75/118 (63.56%), Query Frame = 1
Query:  319 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            VG G+D+HR   G P+ +GG+ +P      AHSDGDVLLH + DA+LG +G  DIG  FPDSD  +  A S++ +   + +  EA   + ++D T++   PKLSP+++ IR N++ LL
Sbjct:  239 VGWGYDVHRYGEGRPMKLGGVLIPEGPEVVAHSDGDVLLHALADALLGCIGAGDIGLHFPDSDAAFDNANSAMLLDRVLHMTHEARLRLTHVDLTIVAQVPKLSPWRDKIRANVARLL 356          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_DESVH (Bifunctional enzyme ispD/ispF OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ispDF PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 50/118 (42.37%), Postives = 75/118 (63.56%), Query Frame = 1
Query:  319 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELL 672
            VG G+D+HR   G P+ +GG+ +P      AHSDGDVLLH + DA+LG +G  DIG  FPDSD  +  A S++ +   + +  EA   + ++D T++   PKLSP+++ IR N++ LL
Sbjct:  239 VGWGYDVHRYGEGRPMKLGGVLIPEGPEVVAHSDGDVLLHALADALLGCIGAGDIGLHFPDSDAAFDNANSAMLLDRVLHMTHEARLRLTHVDLTIVAQVPKLSPWRDKIRANVARLL 356          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_LEPBP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=ispF PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  313 FRVGHGFDLHRL--EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSEL 669
            FRVG+G D H+L  EP  PL++ G+ +  E     HSD DV+LH V DAILGAL L DIG  FPD+DP++K   S+  I++ + L+ E  +++ N+D T +   PK+SP +  +  +L+ +
Sbjct:    2 FRVGNGIDFHKLIHEPFRPLVLAGVEIKSEFAFLGHSDADVILHAVADAILGALSLGDIGVHFPDTDPQYKNMKSTRIIEKCLELVAEKKFKLINVDCTYVGDHPKISPIRAELNASLANI 122          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_LEPBA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=ispF PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  313 FRVGHGFDLHRL--EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSEL 669
            FRVG+G D H+L  EP  PL++ G+ +  E     HSD DV+LH V DAILGAL L DIG  FPD+DP++K   S+  I++ + L+ E  +++ N+D T +   PK+SP +  +  +L+ +
Sbjct:    2 FRVGNGIDFHKLIHEPFRPLVLAGVEIKSEFAFLGHSDADVILHAVADAILGALSLGDIGVHFPDTDPQYKNMKSTRIIEKCLELVAEKKFKLINVDCTYVGDHPKISPIRAELNASLANI 122          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPDF_MAGSA (Bifunctional enzyme ispD/ispF OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=ispDF PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.131e-22
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLI-IGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLG 675
            R   G+D+HR +P      + G+ VPHE G   HSD DV LH + DA+LGA+   DIG  FP +D +WKGA S  F+  A  L+   G  I N+D T+I  RPK+ P++  +   ++E+LG
Sbjct:  227 RSASGYDVHRFDPAKDACWLCGVPVPHEAGLLGHSDADVGLHALTDAVLGAISAGDIGHHFPPTDARWKGAASDQFLAHAGSLVTAKGGRIVNVDVTIICERPKVGPHRAAMAARVAEILG 347          
BLAST of FC875314 vs. ExPASy Swiss-Prot
Match: ISPF_MYCMM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ispF PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  316 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILXRPKLSPYKETIRTNLSELLGA 678
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV  H + DA+L A GL DIG +F   DP+W+G   +  ++  V L+ + GY +GN    ++  RPK+   +   +  LS LL A
Sbjct:    6 RVGLGVDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAAHALCDAVLSAAGLGDIGDVFGVGDPRWEGVSGATMLRHVVELITQHGYRVGNASVQVVGNRPKIGWRRYEAQAVLSRLLNA 126          
The following BLAST results are available for this feature:
BLAST of FC875314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_CAMJD1.235e-2240.83Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPF_BACV81.613e-2242.402-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_LEIXX1.613e-2242.98Bifunctional enzyme ispD/ispF OS=Leifsonia xyli su... [more]
ISPDF_HELHP1.613e-2240.68Bifunctional enzyme ispD/ispF OS=Helicobacter hepa... [more]
ISPDF_DESVV2.107e-2242.37Bifunctional enzyme ispD/ispF OS=Desulfovibrio vul... [more]
ISPDF_DESVH2.107e-2242.37Bifunctional enzyme ispD/ispF OS=Desulfovibrio vul... [more]
ISPF_LEPBP4.694e-2242.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LEPBA4.694e-2242.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_MAGSA6.131e-2242.15Bifunctional enzyme ispD/ispF OS=Magnetospirillum ... [more]
ISPF_MYCMM8.007e-2240.502-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC31402E12EF CTVClemen1 Citrus clementina cDNA clone C31402E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875314 ID=FC875314; Name=FC875314; organism=Citrus clementina; type=EST; length=694bp
GGGGCTTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTC
TCTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCAT
ACACCACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCT
CCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCAC
AACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTT
CTTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCA
AAATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGA
GCCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAG
GCTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGAT
GCAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGA
TTCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAG
CTGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCC
ACGCTGATTCTTNCAAGACCAAAATTGAGCCCATACAAGGAGACTATCCG
AACCAACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAAT
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